View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_high_17 (Length: 314)
Name: NF3065_high_17
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 33299736 - 33300038
Alignment:
| Q |
12 |
atgaatagaagctttaagatatatgtttatcctcacaagaaagatgatccttttgcaaatgtgctattacctgtgaaaactgaacccagtggcaattatg |
111 |
Q |
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| T |
33299736 |
atgaatagaagctttaagatatatgtttatcctcacaagaaagatgatccttttgcaaatgtgctattacccgtgaaaactgaacccagtggcaattatg |
33299835 |
T |
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| Q |
112 |
ccagtgaaagttacttcaagaaagcacttatgaagagtcatttcattacaaaagatccaacaaaagcagatcttttcttcatgcctttttccatagcaag |
211 |
Q |
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| T |
33299836 |
ccagtgaaagttacttcaagaaagcacttatgaagagtcatttcattacaaaagatccaacaaaagcagatcttttcttcatgcctttttccatagcaag |
33299935 |
T |
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| Q |
212 |
tttgcggcatgatcgtcgagttggtgtgggaggtatccaagatttcattagagactatgttcaaaatatgattcacaagtatccgtattggaaccgcacc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33299936 |
tttgcggcatgatcgtcgagttggtgtgggaggtatccaagatttcattagagactatgttcaaaatatgattcacaagtatccgtattggaaccgcacc |
33300035 |
T |
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| Q |
312 |
aac |
314 |
Q |
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||| |
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| T |
33300036 |
aac |
33300038 |
T |
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