View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_high_20 (Length: 301)
Name: NF3065_high_20
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 45825968 - 45825686
Alignment:
| Q |
13 |
tgaaacatcagcatactcatagtatatatatggaatcattgtaacaaataatgtcttgtattctaagacggaggagtaagatgtaaactataaactaaaa |
112 |
Q |
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| T |
45825968 |
tgaaacatcagcatactcatagtatatatatggaatcattgtaacaaataatgtcctatattctaagacggaggagtaagatgtaaactataaactaaaa |
45825869 |
T |
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| Q |
113 |
agcatatataaccaaatacattactataacccattgcaactttaacatttatcctccttaaacaaaaacttaattatccaaaaggaaaagtagaaagata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45825868 |
agcatatataaccaaatacattactataacccattgcaactttaacatttatcctccttaaacaaaaacttaattatccaaaaggaaaagtagaaagata |
45825769 |
T |
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| Q |
213 |
aagatatcgtcgtcactcctcgctgtcctattgtatctttgcatcacaacgtaaatgctcgccatgattaccggatagctaaa |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45825768 |
aagatatcgtcgtcactcctcgctgtcctattgtatctttgcatcacaacgtaaatgctcgccatgattaccggatagctaaa |
45825686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 51156176 - 51156209
Alignment:
| Q |
251 |
ttgcatcacaacgtaaatgctcgccatgattacc |
284 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
51156176 |
ttgcatcacaacgtaaatgctcgccatgagtacc |
51156209 |
T |
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