View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3065_high_23 (Length: 281)
Name: NF3065_high_23
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 36759356 - 36759608
Alignment:
| Q |
10 |
attatactaactttataagatgtagtaaaaagatattataatgggatttttcaatattttgtgtatnnnnnnnnnggtcatgtgaaccaataacagccct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
36759356 |
attatactaactttataagatgtagtaaaaagatattataatgggatttttcaatattttgtgtataaaaaaaaaggtcatgtgaaccaacaacagccct |
36759455 |
T |
|
| Q |
110 |
ccctttacctatactattaaaaccttatatgatgttatggcatctttttgaaatgcgaaaataacttaatggaaaccaataaagggaatcttttcactca |
209 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36759456 |
ccctttacctatactattaaaaccttaaatgatgttatggcatctgtttgaaatgtgaaaataacttaatggaaaccaataaagggaatcttttcactca |
36759555 |
T |
|
| Q |
210 |
aagtagctttttggcaccttataaatatactcatcacttctccctctttcactac |
264 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
36759556 |
aagtagctttttggcaccttataa--atactcctcacttctccctctttcactac |
36759608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 36795558 - 36795635
Alignment:
| Q |
92 |
tgaaccaataacagccctccctttacctatactattaaaaccttatatgatgttatggcatctttttgaaatgcgaaaat |
171 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| ||||||||| ||| ||| || ||||| |||||||||||| |||||| |
|
|
| T |
36795558 |
tgaaccaataacagccctccttttagccataatattaaaacattacttga--ttgtggcacctttttgaaatgggaaaat |
36795635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University