View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_high_29 (Length: 250)
Name: NF3065_high_29
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_29 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 983257 - 983018
Alignment:
| Q |
11 |
cataggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacata |
110 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
983257 |
cataggaaatttgaatgcatgaccaagacacaagatactttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacata |
983158 |
T |
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| Q |
111 |
aaatacctatatactttattttgtagcaaatgtttaaattgtactatattttttcttgtacaaacttgtactatataattaatttaccatagcagttcag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
983157 |
aaatacctatatactttattttgtagcaaatgtttaaactgtactatattttttcttgtacaaacttgtactatattattaatttaccatagcagttcag |
983058 |
T |
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| Q |
211 |
ttcacgcacgcataaactcattaatttaccataccaattc |
250 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
983057 |
ttcatgcacgcataaactcattaatttaccataccaattc |
983018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 40413331 - 40413224
Alignment:
| Q |
9 |
agcataggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccaca |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || | |
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| T |
40413331 |
agcaaaggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaataccctcgaaatatcttctaccatttacatcatcaactgtttgacata |
40413232 |
T |
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| Q |
109 |
taaaatac |
116 |
Q |
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|| ||||| |
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| T |
40413231 |
tacaatac |
40413224 |
T |
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