View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_high_33 (Length: 238)
Name: NF3065_high_33
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_33 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 982741 - 982962
Alignment:
| Q |
17 |
atttagtagggttaatacatgtttacctgtcatcattattctcttatcaatcaaatcaaaccataattaaaagaaaaagatcaagtctactgattcaccc |
116 |
Q |
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| T |
982741 |
atttagtagggttaatacatgtttacatgtcatcattattctcttatcaatcaaatcaaaccataattaaaagaaaaagatcatgtctattgattcaccc |
982840 |
T |
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| Q |
117 |
ttcaactctcaaacaattcttcaacccagagttaactcagtcaagctttcaaaaatcgttcgatgcaacaagtctctcaaccgacctccatgtgattatg |
216 |
Q |
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| T |
982841 |
ttcaactctcaaacaattcttcaacccagagttaactcagtcaggctttcagaaatcattcgatgcaacaagtctctcaaccgacctccacgtgattatg |
982940 |
T |
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| Q |
217 |
ttataatgttgtatgttgtgtt |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
982941 |
ttataatgttgtatgttgtgtt |
982962 |
T |
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