View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_high_35 (Length: 237)
Name: NF3065_high_35
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 35882340 - 35882498
Alignment:
| Q |
65 |
attgatacttatagtgtgttctatatcatcaacagtatttgttatagctattatttccatatgggtcatctttattataaacaaaaggatgaaacaacgt |
164 |
Q |
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| T |
35882340 |
attgatacttatagtgtgttctgtatcatcaacagtatttgttatagctattatttccatttgggtcatctttattataaacaaaaagatgaaacaacgt |
35882439 |
T |
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| Q |
165 |
tccaagatgaagaaatgggctatctcattaccagttatgatgaacaaaacaaacacaaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882440 |
tccaagatgaagaaatgggctatctcattaccagttatgatgaacaaaacaaacacaaa |
35882498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 24456541 - 24456699
Alignment:
| Q |
65 |
attgatacttatagtgtgttctatatcatcaacagtatttgttatagctattatttccatatgggtcatctttattataaacaaaaggatgaaacaacgt |
164 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
24456541 |
attgatacttatagtgtgttctgtatcatcaacagtatttgttatagctattatttccatttgggtcatctttattataaacaaaaagatgaaacaacgt |
24456640 |
T |
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| Q |
165 |
tccaagatgaagaaatgggctatctcattaccagttatgatgaacaaaacaaacacaaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456641 |
tccaagatgaagaaatgggctatctcattaccagttatgatgaacaaaacaaacacaaa |
24456699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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