View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_high_43 (Length: 215)
Name: NF3065_high_43
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 8169974 - 8169794
Alignment:
| Q |
18 |
agatcaatcattctaaccattcacttttggtatataaataccaaaatatcttagccgtcatcaacatattttggtcatggcaatagatcatgagtcaagg |
117 |
Q |
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| T |
8169974 |
agatcaatcattctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaagg |
8169875 |
T |
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| Q |
118 |
attactctccggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatg |
198 |
Q |
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| T |
8169874 |
attactctccggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatg |
8169794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 8172593 - 8172427
Alignment:
| Q |
29 |
tctaaccattcacttttggtatataaataccaaaatatcttagccgtcatcaacatattttggtcatggcaatagatcatgagtcaaggattactctccg |
128 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
8172593 |
tctaaccacacacttttggtgtataaataccaaaatatcttagccat-attaacatattgtggtcatggcaatagatcatgagtcaaggatcactctccg |
8172495 |
T |
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| Q |
129 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatata |
196 |
Q |
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| T |
8172494 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatata |
8172427 |
T |
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