View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_high_8 (Length: 407)
Name: NF3065_high_8
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 38876792 - 38877156
Alignment:
| Q |
19 |
ctgttcataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatggttcattcatgctttcaagattaaatctc |
118 |
Q |
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| T |
38876792 |
ctgttcataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatgtttcgttcatgctttcaagattaaatctc |
38876891 |
T |
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| Q |
119 |
agttttgcttttgctctttcaaatagagctctcaagtcgtcactgcatgtcattcaaattattaaacacaagttaattaagctcaacaactatatattg- |
217 |
Q |
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| T |
38876892 |
agctttgcttttgctctttcaaatagagctctcaggtcctcactgcatgtcattcaaattattaaacacaag----ttaaggtcaacaactatatattgc |
38876987 |
T |
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| Q |
218 |
----caaatataatccatcatctatcaattataataaattgatgagttttagatgaacactatatatccaatgcgagttgcatagagttttcttgacatg |
313 |
Q |
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| T |
38876988 |
aaatcaaatataatccatcatctatcaagtataataaattgattact-----atg-----tctatatccaatgggagttgcatagagttttcttaacatg |
38877077 |
T |
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| Q |
314 |
aaattttatggttgtctagtaggtagtaaattatacactcagagcagcttcta---attattgttcacaaatagtctta |
389 |
Q |
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| T |
38877078 |
aaattttatggttgtctagtaggtagtaaattatacactcagagcagcttctaattattattgttcacaaatagtctta |
38877156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 16627968 - 16628168
Alignment:
| Q |
24 |
cataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatggttcattcatgctttcaagattaaatctcagttt |
123 |
Q |
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| T |
16627968 |
catattcaaggattgcttctctagcacaaccttcccatgctctagctacatccttaatcaaccatggttgcttcatgctttccagattaactctcagctt |
16628067 |
T |
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| Q |
124 |
tgcttttgctctttcaaatagagctctcaagtcgtcactgcatgtcattcaaattattaaacacaagttaattaagctcaacaactatatattgcaaata |
223 |
Q |
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| T |
16628068 |
tccttttgctctctcaaacaaatctctaaagtcctcactgcatgtaattcaaattatgaaacaca----tattatggtcaacaattatatattgcaaata |
16628163 |
T |
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| Q |
224 |
taatc |
228 |
Q |
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||||| |
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| T |
16628164 |
taatc |
16628168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 16636849 - 16637049
Alignment:
| Q |
24 |
cataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatggttcattcatgctttcaagattaaatctcagttt |
123 |
Q |
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| T |
16636849 |
catattcaaggattgcttctctagcacaaccttcccatgctctagctacatccttaatcaaccatggttgcttcatgctttccagattaactctcagctt |
16636948 |
T |
|
| Q |
124 |
tgcttttgctctttcaaatagagctctcaagtcgtcactgcatgtcattcaaattattaaacacaagttaattaagctcaacaactatatattgcaaata |
223 |
Q |
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| T |
16636949 |
tccttttgctctctcaaacaaatctctaaagtcctcactgcatgtaattcaaattatgaaacaca----tattatggtcaacaattatatattgcaaata |
16637044 |
T |
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| Q |
224 |
taatc |
228 |
Q |
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||||| |
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| T |
16637045 |
taatc |
16637049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 16615854 - 16616087
Alignment:
| Q |
8 |
ccaccaatagcctgttcataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatggttcattcatgctttcaa |
107 |
Q |
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|||||| |||| ||| |||| ||||| ||||| ||| || |||||| |||||||||||| | || |||||||||||||||||||| ||| |||||| | |
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| T |
16615854 |
ccaccattagcatgtgcatattcaaggattgcttctctagcacaaccttcccatgctctagctacatccttaatcaaccatggttgcttcgtgctttgca |
16615953 |
T |
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| Q |
108 |
gattaaatctcagttttgcttttgctctttcaaatagagctctcaagtcgtcactgcatgtcattcaaattattaaacacaagttaattaagctcaacaa |
207 |
Q |
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| T |
16615954 |
gtttaagtctcagctttgcttttgctttctcaaaaagagctctcaggtcatcactgcatgt-aatcaaattatgaaacaca----aattatggtcaacag |
16616048 |
T |
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| Q |
208 |
ctatatattgcaaatataatccatcatctatcaattata |
246 |
Q |
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| T |
16616049 |
ctatacattgcaaatattgtccatcatcaatcaagtata |
16616087 |
T |
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