View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_10 (Length: 375)
Name: NF3065_low_10
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_10 |
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| [»] chr3 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 185 - 375
Target Start/End: Original strand, 50804051 - 50804241
Alignment:
| Q |
185 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804051 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
50804150 |
T |
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| Q |
285 |
gcattttcacatctctgaaacactctagcaagtgaagcagctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatc |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804151 |
gcattttcacatctctgaaacactctagcaagtgaagcggctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatc |
50804241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 185 - 375
Target Start/End: Complemental strand, 50871826 - 50871636
Alignment:
| Q |
185 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
284 |
Q |
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| T |
50871826 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
50871727 |
T |
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| Q |
285 |
gcattttcacatctctgaaacactctagcaagtgaagcagctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatc |
375 |
Q |
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| T |
50871726 |
gcattttcacatctctgaaacactctagcaagtgaagcggctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatc |
50871636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 50803912 - 50804057
Alignment:
| Q |
18 |
atttgtgacatttt--tatgactttttaaagtttcaatgaaagaatatgtaaagacttccaataaaaattgtgaacgtaacaattacaaatacaggaaaa |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50803912 |
atttgtgacatttttttatgactttttaaagtttcaatgaaagaatatgtaaagacttccaataaaaattgtgaacgtaacaattacaaatacaggaaaa |
50804011 |
T |
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| Q |
116 |
gtattatatcactatattacaggtacagagatggacattggtactg |
161 |
Q |
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| T |
50804012 |
gtattatatcactatattacaggtacagagatggacattggtactg |
50804057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 50871965 - 50871820
Alignment:
| Q |
18 |
atttgtgacattttt--atgactttttaaagtttcaatgaaagaatatgtaaagacttccaataaaaattgtgaacgtaacaattacaaatacaggaaaa |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871965 |
atttgtgacatttttttatgactttttaaagtttcaatgaaagaatatgtaaagacttccaataaaaattgtgaacgtaacaattacaaatacaggaaaa |
50871866 |
T |
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| Q |
116 |
gtattatatcactatattacaggtacagagatggacattggtactg |
161 |
Q |
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| T |
50871865 |
gtattatatcactatattacaggtacagagatggacattggtactg |
50871820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 185 - 375
Target Start/End: Complemental strand, 5286350 - 5286161
Alignment:
| Q |
185 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
284 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
5286350 |
ggtactgaaacatccc-ctgcagcaaagcttgaatctctagtttgagctgaattgctagcaaatgcatagcctacacctaatccaccgtaatgcagagat |
5286252 |
T |
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| Q |
285 |
gcattttcacatctctgaaacactctagcaagtgaagcagctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatc |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
5286251 |
gcattttcacatctctgaaacactctagcaagtgaagcggctttacgtctagctcgctttgtcccggtaaataatagggtttgaagtaatc |
5286161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 5286477 - 5286344
Alignment:
| Q |
28 |
tttttatgactttttaaagtttcaatgaaagaatatgtaaagacttccaataaaaattgtgaacgtaacaattacaaatacaggaaaagtattatatcac |
127 |
Q |
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||||||||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
5286477 |
tttttatgactttataaagtttcaattaaagaatctgtaaaaacttccaataaaaattgtgaacgtaacaattacaaatacagaaaaagtattataccac |
5286378 |
T |
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| Q |
128 |
tatattacaggtacagagatggacattggtactg |
161 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
5286377 |
tatattacaggtacagagattgacattggtactg |
5286344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 19058025 - 19057946
Alignment:
| Q |
296 |
tctctgaaacactctagcaagtgaagcagctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatc |
375 |
Q |
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| T |
19058025 |
tctctgaaacactctagcaagtgaagcggctttacgtctagctcactttgtcccggtaaatagtagggtttgaagtaatc |
19057946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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