View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_11 (Length: 365)
Name: NF3065_low_11
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 48631271 - 48630916
Alignment:
| Q |
1 |
ttacttaacttattagccgtctggccaaattataaaattgatatctcaaatcaaaaggatgaaattttttgttaaaggaaatgtacatttattctagatc |
100 |
Q |
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| T |
48631271 |
ttacttaacttattagccgtctggccaaattataaaaatgatatctcaaatcaaaaggatgaaattttttgttaaaggaaatgtacatttattctagatt |
48631172 |
T |
|
| Q |
101 |
ttcaagtgctgtctttctatagtagtttttaaacaaagtaacgggttctttgaacagagagtactcaaatatgcacggtagtaatatcatccaatgagta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48631171 |
ttcaagtgctgtctttctatagtagtttttaaacaaagtaacgggttctttaaagagacagtactcaaatatgcacagtagtaatatcatccaatgagta |
48631072 |
T |
|
| Q |
201 |
aatagtcaaaaaccttcaaaagttgtaaattcttgcgaataccactttcaaattagagnnnnnnncaaaattatcttcaaaattgttaaacgtctatcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
48631071 |
aatagtcaaaaaccttcaaaagttgtaaattcttgcgaataccactttcaaattagagaaaaaaacaaaattatctccaaaattgttaaacgtctatcag |
48630972 |
T |
|
| Q |
301 |
tttgccccttccgtcaatttacttatttggtcaacataacgtgacaaatgtctgtg |
356 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
48630971 |
tttgccccttccgtcaatttactcatttggtcaacatgacgtgacaaatgtctgtg |
48630916 |
T |
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