View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_13 (Length: 344)
Name: NF3065_low_13
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 49660143 - 49659814
Alignment:
| Q |
14 |
aacctgtgacacggcaaacacaaaacttacaattattaacagttaaaagaaaactttcaatgacattgtcagctattaaaaaacaatcatatcttgtcaa |
113 |
Q |
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| T |
49660143 |
aacctgtgacatggcaaacacaaaacttacaattattaacagttaaaagaaaactttcaatgacattgtcagctattaaaaa-caatcatatcttgtcaa |
49660045 |
T |
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| Q |
114 |
aaaatgagtattaacgaaaacctatgaagtatgatgaagcaccaacacaaggaacagacgctgatcatgacactaacaccaacaccgatagaaattagag |
213 |
Q |
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| T |
49660044 |
aaaatgagtattaacgaaaacctatgaagtatgatgaagcaccaacacaaggaacagacgctgatcatgacactaacaccgacaccgatagaaattagag |
49659945 |
T |
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| Q |
214 |
aaaactgaaataattgagtgtaatcacatgtgtttgtgtggtatccacatcggacacggaacaagtcttcgattcggtccaatagagcaaaaaacacgat |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49659944 |
aaaactgaaataattgagtgtaatcacatgtgtctgtgtggtatccacatcggacacggaacaagtcttcgattcggtccaatagagcaaaaaacacgat |
49659845 |
T |
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| Q |
314 |
ggcgatggcaacacagatcaaaagaacacac |
344 |
Q |
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| T |
49659844 |
ggcgatggcaacacagatcaaaagaacacac |
49659814 |
T |
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