View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_17 (Length: 320)
Name: NF3065_low_17
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 3754243 - 3754546
Alignment:
| Q |
1 |
gaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcgacaaagatcttgtcgccattggatcaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3754243 |
gaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcgacaaagatcttgtcgccattggatcaacg |
3754342 |
T |
|
| Q |
101 |
cttttagcgttggaaatcaatgctacacaaacttggtggcatgtgaaagttgaaaataatttgtatggagaagagtttgcaaaagaaaataggattgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3754343 |
cttttagcgttggaaatcaatgctacacaaacttggtggcatgtgaaagttgaaaataatttgtatggagaagagtttgcaaaagaaaataggattgttg |
3754442 |
T |
|
| Q |
201 |
gtattttgtgggctaataagagagatagtaaactttggtgggctccttctgaatgtagagggtgtagggttagtatccaagttatgcctttgttgcctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3754443 |
gtattttgtgggctaataagagagatagtaaactttggtgggctccttctgaatgtagagggtgtagggttagtatccaagttatgcctttgttgcctat |
3754542 |
T |
|
| Q |
301 |
tact |
304 |
Q |
| |
|
|||| |
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| T |
3754543 |
tact |
3754546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 2 - 300
Target Start/End: Complemental strand, 4045994 - 4045696
Alignment:
| Q |
2 |
aatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcgacaaagatcttgtcgccattggatcaacgc |
101 |
Q |
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|||||||||||||| |||||||| |||||||| || ||||||| ||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4045994 |
aatcaagaaagttctagtgaagctgtgaatgcgtactattcagtagcattggttggtttagcatatggcgacaaagatcttgtcgccactggatcaacgc |
4045895 |
T |
|
| Q |
102 |
ttttagcgttggaaatcaatgctacacaaacttggtggcatgtgaaagttgaaaataatttgtatggagaagagtttgcaaaagaaaataggattgttgg |
201 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| ||||| || || || |
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| T |
4045894 |
ttttagcgttggaagtcaatgccgtgcaaacttggtggcatgtgaaagctgaaaataatttgtatggtggagattttgcgaaagagaatagaatagtggg |
4045795 |
T |
|
| Q |
202 |
tattttgtgggctaataagagagatagtaaactttggtgggctccttctgaatgtagagggtgtagggttagtatccaagttatgcctttgttgcctat |
300 |
Q |
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||||||||||||||||| ||||||||| ||| ||||||||| | ||||||||||||| ||||||| ||||||| |||||| |||||||||||||||| |
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| T |
4045794 |
aattttgtgggctaataaaagagatagtgcactatggtgggcttcatctgaatgtagagagtgtaggcttagtatacaagttttgcctttgttgcctat |
4045696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 6465095 - 6465023
Alignment:
| Q |
2 |
aatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcgaca |
74 |
Q |
| |
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|||||||| ||| | |||||||| ||||||||||| ||||||||||| ||||| ||| | ||||||||||||| |
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| T |
6465095 |
aatcaagagagtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgaca |
6465023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 6516682 - 6516751
Alignment:
| Q |
161 |
ttgtatggagaagagtttgcaaaagaaaataggattgttggtattttgtgggctaataagagagatagta |
230 |
Q |
| |
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||||||| ||||||||| ||||||| |||||||| || || |||||| || ||||||||||||| |||| |
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| T |
6516682 |
ttgtatgatgaagagtttacaaaagagaataggatagtgggaattttgaggtctaataagagagagagta |
6516751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6505243 - 6505175
Alignment:
| Q |
1 |
gaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatgg |
69 |
Q |
| |
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||||||||| ||| | |||||||| ||||||||||| ||| | ||||||||||| || |||||||||| |
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| T |
6505243 |
gaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatgggaatagcatatgg |
6505175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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