View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_19 (Length: 310)
Name: NF3065_low_19
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 10605182 - 10605445
Alignment:
| Q |
1 |
aagaataataaggacctttcaaggacaagggcaaaaggggccatgaagatagtagcaataacatgacggtacacagagagtacccaatgactcatgccat |
100 |
Q |
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| T |
10605182 |
aagaataataaggacctttcaaggacaagggcaaaaggggccatgaagatagtagcaataacatgacggtacacagagagtacccaatgactcatgccat |
10605281 |
T |
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| Q |
101 |
gcttgaatgaaaccatagtgatgatgtacattcctgcatagccaaattgaagggacaccatagcaaggtaaggcttaattttacgtagccccttgctcat |
200 |
Q |
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| T |
10605282 |
gcttgaatgaaaccatagtgatgatgtacattcctgcatagccaaattgaagggacaccatagcaagataaggcttaattttacgtagccccttgctcat |
10605381 |
T |
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| Q |
201 |
tttttcacatgtatcagccatatctaactcccttaagtgtgtgtgtataattgaatactaagcttt |
266 |
Q |
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| T |
10605382 |
tttttcacatgtatcagccatatctaactcccttaagtgtgtgtg--taattgaatactaagcttt |
10605445 |
T |
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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 32604646 - 32604741
Alignment:
| Q |
60 |
aacatgacggtacacagagagtacccaatgactcatgccatgcttgaatgaaaccatagtgatgatgtacattcctgcatagccaaattgaaggga |
155 |
Q |
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||||||||||||||| ||||| | |||||| ||||| ||||| ||||| ||||||||||| ||||||||||| || | || |||||||||||||| |
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| T |
32604646 |
aacatgacggtacacggagagaatccaatggctcataccatgtttgaaagaaaccatagtaatgatgtacatccccgagtaaccaaattgaaggga |
32604741 |
T |
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