View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3065_low_2 (Length: 750)

Name: NF3065_low_2
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3065_low_2
NF3065_low_2
[»] chr5 (4 HSPs)
chr5 (412-750)||(1953011-1953354)
chr5 (191-367)||(1953358-1953530)
chr5 (15-147)||(1953573-1953704)
chr5 (194-252)||(27308229-27308287)
[»] chr3 (3 HSPs)
chr3 (191-252)||(43189558-43189619)
chr3 (191-240)||(35850803-35850852)
chr3 (191-252)||(44991098-44991159)
[»] chr1 (4 HSPs)
chr1 (191-252)||(49564403-49564463)
chr1 (95-147)||(17775820-17775872)
chr1 (191-252)||(12115086-12115147)
chr1 (214-251)||(43807256-43807293)
[»] chr7 (2 HSPs)
chr7 (191-250)||(8900216-8900275)
chr7 (191-252)||(8114787-8114848)
[»] chr8 (4 HSPs)
chr8 (202-252)||(9815106-9815156)
chr8 (191-252)||(13795737-13795798)
chr8 (191-240)||(34873518-34873567)
chr8 (192-233)||(15238042-15238083)
[»] chr2 (2 HSPs)
chr2 (192-231)||(41385711-41385750)
chr2 (191-232)||(8236834-8236875)
[»] chr4 (1 HSPs)
chr4 (215-252)||(23211207-23211244)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 412 - 750
Target Start/End: Complemental strand, 1953354 - 1953011
Alignment:
Q  412 tcaaatatcacggttcactttcactcctccaccaagttggattggagctttgataccaattgtttaggagttcgaatgagtgtcgagagcaacaacgaat 511  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  1953354 tcaaatatcatggttcactttcactcctccaccaagttggattggagctttgataccaattgtttaggagttcgaatgagcatcgagaacaacaacgaat 1953255  T
Q  512 caatgatatataatcataagagaaagtgacatcacatctccatccaaaaaatttaattaatcaaaacattagagatatcaattac----attatatatcc 607  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     |||||| |||    
T  1953254 caatgatatataatcataagagagagtgacatcacatctccatccaaaaaatttaattaatcaaaacattagagatatcagttacctttcttatatctcc 1953155  T
Q  608 gacattttattcatcaataataaatgtgtgactaacccactaacactaataaatgtgtgactagccactaacacctagaac----tcaacaattttgaaa 703  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  1953154 gacattttattcatcaataataaatgtgtgactaa-ccactagcactaataaatgtgtgactagccactaacacctagaactcgatcaacaattttgaaa 1953056  T
Q  704 gtcaaacttgtatgaataagtaattttaaaagtaaatgatatagaat 750  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  1953055 gtcaaacttgtatgaataagtaa--ttaaaagtaaaggatatagaat 1953011  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 191 - 367
Target Start/End: Complemental strand, 1953530 - 1953358
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcatnnnnnnnnnnnnnttcatcaaactcataaagaaactct 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  1953530 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcataaaaaaaaa----ttcatcaaactcataaagaaactct 1953435  T
Q  291 ttgatttgatttcttatatattcaactttttatccattaataaacaatatgacactaaacactcacacttgaacccc 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1953434 ttgatttgatttcttatatattcaactttttatccattaataaacaatatgagactaaacactcacacttgaacccc 1953358  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 1953704 - 1953573
Alignment:
Q  15 cacagatcagagaacaaaacgaggagtggttgcagaatcaaaaactacggtaacactttcatcctttatcnnnnnnnnncttttcgatttagtattttat 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||          ||||||||||||||||||||    
T  1953704 cacagatcagagaacaaaacgaggggtggttgcagaatcaaaagttgcggtaacactttcatcctttatcttttttttt-ttttcgatttagtattttat 1953606  T
Q  115 gttataaagtgtcaacattattacctttttaat 147  Q
    |||||||||||||||||||||||||||||||||    
T  1953605 gttataaagtgtcaacattattacctttttaat 1953573  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 27308229 - 27308287
Alignment:
Q  194 atcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    ||||| || ||||||||| ||||||||  ||||||||||||||||||| || |||||||    
T  27308229 atcaaactcataaacaaacccaaatctatatcatacaaacatagaaatacatatttcat 27308287  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 43189619 - 43189558
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    |||||||| || ||||||  ||||||||||||||| |||||||||||||| |||||||||||    
T  43189619 ttcatcaaactcataaacgcatccaaatcttcatcctacaaacatagaaacccaaatttcat 43189558  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 35850803 - 35850852
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaa 240  Q
    |||||||| || |||||||||| |||||||||||||||||||| ||||||    
T  35850803 ttcatcaaactcataaacaaattcaaatcttcatcatacaaacctagaaa 35850852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 44991159 - 44991098
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    |||||||| || |||||||||  | |||||||||||||||||||||||||  ||||||||||    
T  44991159 ttcatcaaactcataaacaaactcgaatcttcatcatacaaacatagaaactcaaatttcat 44991098  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 49564403 - 49564463
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    |||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  49564403 ttcatcaaactcataaa-aaacccaaatcttcatcatacaaacatagaaacccaaatttcat 49564463  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 17775820 - 17775872
Alignment:
Q  95 ttttcgatttagtattttatgttataaagtgtcaacattattacctttttaat 147  Q
    ||||||||||||| ||||||| |||||| |||||| ||||||| |||||||||    
T  17775820 ttttcgatttagtcttttatgctataaaatgtcaatattattatctttttaat 17775872  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 12115147 - 12115086
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    ||||||||||| ||| |||||| |||||||||||||||| | | ||||||  ||||||||||    
T  12115147 ttcatcaagctcatagacaaatgcaaatcttcatcatactagcctagaaaatcaaatttcat 12115086  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 43807293 - 43807256
Alignment:
Q  214 caaatcttcatcatacaaacatagaaatccaaatttca 251  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  43807293 caaatattcatcatgcaaacatagaaatccaaatttca 43807256  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 8900275 - 8900216
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttc 250  Q
    |||||||| || |||||||||  ||||| ||||||||||||||||||||| |||||||||    
T  8900275 ttcatcaaactcataaacaaactcaaattttcatcatacaaacatagaaacccaaatttc 8900216  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 8114787 - 8114848
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    |||||||| || ||||||||| ||||||||||||| |||||| ||| ||| || ||||||||    
T  8114787 ttcatcaaactcataaacaaacccaaatcttcatcttacaaaaataaaaacccgaatttcat 8114848  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 9815106 - 9815156
Alignment:
Q  202 tataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    |||||||||| | ||||||||||||||||||||||||||| ||| ||||||    
T  9815106 tataaacaaaccaaaatcttcatcatacaaacatagaaattcaattttcat 9815156  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 13795737 - 13795798
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    |||||||| ||  |||||||| ||||||||||||||||| |||||||||| |||| ||||||    
T  13795737 ttcatcaaactcgtaaacaaacccaaatcttcatcatactaacatagaaacccaattttcat 13795798  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 34873518 - 34873567
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaa 240  Q
    |||||||| || ||||||||| | ||||||||||||||||||||||||||    
T  34873518 ttcatcaaactcataaacaaacctaaatcttcatcatacaaacatagaaa 34873567  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 15238083 - 15238042
Alignment:
Q  192 tcatcaagcttataaacaaatccaaatcttcatcatacaaac 233  Q
    ||||||| || |||||||||||||||||||||||||| ||||    
T  15238083 tcatcaaactcataaacaaatccaaatcttcatcataaaaac 15238042  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 41385711 - 41385750
Alignment:
Q  192 tcatcaagcttataaacaaatccaaatcttcatcatacaa 231  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  41385711 tcatcaaactcataaacaaatccaaatcttcatcatacaa 41385750  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 8236834 - 8236875
Alignment:
Q  191 ttcatcaagcttataaacaaatccaaatcttcatcatacaaa 232  Q
    |||||||| || ||||||||| ||||||||||||||||||||    
T  8236834 ttcatcaaactcataaacaaacccaaatcttcatcatacaaa 8236875  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 23211207 - 23211244
Alignment:
Q  215 aaatcttcatcatacaaacatagaaatccaaatttcat 252  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  23211207 aaatcttcattatacaaacatagaaattcaaatttcat 23211244  T

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