View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_20 (Length: 308)
Name: NF3065_low_20
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 28 - 306
Target Start/End: Original strand, 34761563 - 34761841
Alignment:
| Q |
28 |
cgagctaatctatgaaatgtgaaatttcaagagtactttgagaatgaccaagtaaaatacattattgtccctagagatggatagatccctcttgccttct |
127 |
Q |
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| T |
34761563 |
cgagctaatctatgaaatgtgaaatttcaagagtactttgagaatgaccaagtaaaatacattgttgtccctagaaatggatagatccctcttgccttct |
34761662 |
T |
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| Q |
128 |
aagtatatgcttttatagccttctgagcggtcaagtcgagctatgcatgcatgttgaatggtggagatgagcttagcataagttgaatagtcaaagtgta |
227 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34761663 |
aagtatatgcttttatagccttatgagcggtcaagtcgagctatgcatgcatgttgaatggtggagatgagcttagcataagttgaatagtcaaagtgta |
34761762 |
T |
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| Q |
228 |
agaatccacgtggtgtccttcgtaccagtccatagtccaccaaacgtcaagtcttttgcaatgtagttgtttgttcttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34761763 |
agaatccacgtggtgtccttcgtaccagtccatagtccaccaaacgtcaagtcttttgcaatgtagttgtttattcttc |
34761841 |
T |
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