View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_22 (Length: 289)
Name: NF3065_low_22
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 33399512 - 33399776
Alignment:
| Q |
16 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc |
115 |
Q |
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| T |
33399512 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc |
33399611 |
T |
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| Q |
116 |
tgaaggtgaggagggtgctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg |
215 |
Q |
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| T |
33399612 |
tgaaggtgaggagggtgctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg |
33399711 |
T |
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| Q |
216 |
taccatcttctcccaaaggttgtcaatgcaattttatcatgtccacttgttaacacaggttctgc |
280 |
Q |
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| T |
33399712 |
taccatcttctcccataggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgc |
33399776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 33395628 - 33395880
Alignment:
| Q |
16 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc |
115 |
Q |
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| T |
33395628 |
gagacgaagttatttctgatgtctgcacgctagcagcccatggcgcatttgaaggtggtgctgcttcaggagtcggcacaggtgagggtgacggggaggc |
33395727 |
T |
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| Q |
116 |
tgaaggtgaggagggtgctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg |
215 |
Q |
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| T |
33395728 |
tgaaggt---gagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatg |
33395824 |
T |
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| Q |
216 |
taccatcttctcccaaaggttgtcaatgcaattttatcatgtccacttgttaacac |
271 |
Q |
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| T |
33395825 |
taccatcttcttccataggttgtcaataaaattgtatcatgtccactagttaacac |
33395880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 33441945 - 33442087
Alignment:
| Q |
133 |
ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa |
232 |
Q |
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| T |
33441945 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
33442044 |
T |
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| Q |
233 |
ggttgtcaatgcaattttatcatgtccacttgttaacacaggt |
275 |
Q |
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| T |
33442045 |
ggttgtaattataattttgtcttgcccactggttaacacaggt |
33442087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 33452165 - 33452307
Alignment:
| Q |
133 |
ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa |
232 |
Q |
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| T |
33452165 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
33452264 |
T |
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| Q |
233 |
ggttgtcaatgcaattttatcatgtccacttgttaacacaggt |
275 |
Q |
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| T |
33452265 |
ggttgtaattataattttgtcttgcccactggttaacacaggt |
33452307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 33395529 - 33395622
Alignment:
| Q |
16 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg |
109 |
Q |
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| T |
33395529 |
gagaccaagttatctctgatgtctgcgcgccagcagcccatggtgcatttgaagacggtgctgcttcatgggccggtgtaggtgagggtgaggg |
33395622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 33399413 - 33399506
Alignment:
| Q |
16 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg |
109 |
Q |
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| T |
33399413 |
gagaccaatttatctctgatgcctgcacgctagcaacccatggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgagggcgaggg |
33399506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 33399357 - 33399408
Alignment:
| Q |
53 |
ccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggt |
104 |
Q |
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| T |
33399357 |
ccatggtgcatttgaaggtggtgctgcttgaggggccggtgtaggtgagggt |
33399408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 33395473 - 33395507
Alignment:
| Q |
53 |
ccatggtgcatttgaaggcggtgctgcttcagggg |
87 |
Q |
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| T |
33395473 |
ccatggtgcatttgaaggcggtgctacttcagggg |
33395507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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