View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_23 (Length: 286)
Name: NF3065_low_23
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 33303042 - 33302783
Alignment:
| Q |
10 |
gcatagggtggagtttatctacaatgttctatagcatatattctattctacttcattaatcatgatagaatagttactactattattattccctctaagg |
109 |
Q |
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| T |
33303042 |
gcatagagtggagcttatctacaatgttctatagcatatattctattctacttcattaatcatgatagaatagttactactattattattccctctaagg |
33302943 |
T |
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| Q |
110 |
ttgtgttgggtggactagannnnnnnaccgtcattcaaggtttgttttgtgatattctcaaatatgaattattggttgtgttttgaaatgggagaattaa |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33302942 |
ttgtgttgggtggactagatttttt-accgtcattcaaggtttgttttgtgatattctcaaatatgaattattggttgtgttttgcaatgggagaattaa |
33302844 |
T |
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| Q |
210 |
ggtgatatttgtcatgaaaaattagattgaaaggagatagctaggaagtgattgtttgtac |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302843 |
ggtgatatttgtcatgaaaaattagattgaaaggagatagctaggaagtgattgtttgtac |
33302783 |
T |
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