View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_25 (Length: 265)
Name: NF3065_low_25
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 1453286 - 1453037
Alignment:
| Q |
4 |
gagtgagatgaagacat--caaccgtattattaaaatgaacggatgagattaaatgatcatcacgtgctcctctattcaatcactttacacaaacttgca |
101 |
Q |
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| T |
1453286 |
gagtgagaggaagacatatcaaccgtatgattaaaatgaagggatgagattaaatgatcatcacgtgctcctcttttcaatcattttacacaaacttgca |
1453187 |
T |
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| Q |
102 |
gaactcgtctttgtttcaagtcatctaaccggatgccgcatcgaactcatctcctcaaatcatcccgcatatgatgtgtaaattgaatgttccatggtca |
201 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1453186 |
gaactcgtctttgtttcaagtcatctaaccggacgccgcatcgaactcatctcctcaaatcatcccacatatgatgtgtaaattgaatgttccatggtca |
1453087 |
T |
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| Q |
202 |
tgttcagaaacat--tgttttcacaattttttgtttcactaaattagaga |
249 |
Q |
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| T |
1453086 |
tgtttagaaacattgtgttttcacaatttttttttccactaaattagaga |
1453037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 15899200 - 15899422
Alignment:
| Q |
4 |
gagtgagatgaagacat--caaccgtattattaaaatgaacggatgagattaaatgatcatcacgtgctcctctattcaatcactttacacaaacttgca |
101 |
Q |
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|||||||| |||||||| ||||||||| ||||||||||| || | ||||||||||||||||| ||||||||| |||||||| ||||||||||| ||| |
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| T |
15899200 |
gagtgagaggaagacatgtcaaccgtatgattaaaatgaagggcagggattaaatgatcatcacatgctcctcttttcaatcattttacacaaaccagca |
15899299 |
T |
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| Q |
102 |
gaactcgtctttgtttcaagtcatctaaccggatgccgcatcgaactcatctcctcaaatcatcccgcatatgatgtgtaaattgaatgttccatggtca |
201 |
Q |
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|||| | |||| ||||||||||||| |||||| ||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
15899300 |
gaacccatcttcgtttcaagtcatcgaaccggctgccgcatcgaactcgtctcctcaaatcatccagc--atgatgcgtaaattgaatgttccatggtca |
15899397 |
T |
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| Q |
202 |
tgttc-agaaacattgttttcacaa |
225 |
Q |
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|| || ||| ||||||||||||||| |
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| T |
15899398 |
tgctcaagacacattgttttcacaa |
15899422 |
T |
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