View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_28 (Length: 253)
Name: NF3065_low_28
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 43646300 - 43646092
Alignment:
| Q |
15 |
cagagagaatggcttgtttcagagcttgtaatgctatgtaagcattttggatgcggttgttttcaaagacaagagatgggttgtctatggtttgggctga |
114 |
Q |
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| T |
43646300 |
cagagagaatggcttgtttcaaagcttgtaatgctatgtaagcattttggatgcggttgttttcaaagacaagagatgggttgtctatggtttgggctga |
43646201 |
T |
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| Q |
115 |
gagggagagtgtgtttatggttagaagcagtgtaactatgaggagtgtttgtgtttgtgtttgtgatttcttcatcatcgtgttaataaaccaaatgggg |
214 |
Q |
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| T |
43646200 |
gagggagagtgtgtttatggttagaagcagtgtaactatgaggagtgtt------------tgtgatttcttcatcatcgtgttaataaaccaaatgggg |
43646113 |
T |
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| Q |
215 |
taattaatttcttcaactttg |
235 |
Q |
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| T |
43646112 |
taattaatttcttcaactttg |
43646092 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 32271704 - 32271764
Alignment:
| Q |
15 |
cagagagaatggcttgtttcagagcttgtaatgctatgtaagcattttggatgcggttgtt |
75 |
Q |
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| T |
32271704 |
cagaaagaatagcttgtttaaaagcttgtaatgccacgtaagcgtttttgatgcggttgtt |
32271764 |
T |
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