View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_3 (Length: 647)
Name: NF3065_low_3
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Complemental strand, 15773652 - 15773024
Alignment:
| Q |
1 |
caaagcaaaatagattctattgatcaaactagtagaaagg--aaaatttacaacttaattacaacatggaatccttctcatgatgtagcatatgcattcc |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
15773652 |
caaagcaaaatagattctattgatcaaactagtagaaaggtaaaaatttacaacttcattacaacatgcaatccttctcatgatgtagcatatgctttcc |
15773553 |
T |
|
| Q |
99 |
atcaggctgtgctagatgccaattcaatctcatacttcctcataataggagtagcacatacaatgctggaatcacttaccataacagaagaaacaccagt |
198 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15773552 |
atcaagctgtgctagatgccaattcaatctcatatttcctcataataggagtagcacatacaatgctggaatcacttaccataacagaagaaacactagt |
15773453 |
T |
|
| Q |
199 |
tgtgtatgtatttaactcttgctctgaatgagtagtagtaaacttagtcccatcaatcaaatgttgaaaagggttaaaagtctttggaatttctaatgaa |
298 |
Q |
| |
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||| ||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15773452 |
tgtatatgtatttgactcttgcactgaatgagtagta---aactcagtcccatcaatcaaatgttgaaatgggttaaaagtctttggaatttctaatgaa |
15773356 |
T |
|
| Q |
299 |
ccttccaacattttcataacatcactcatcataggccttaattcttgcctatattgaacacacaataaagctaccttaaccattctctcagcaatttctc |
398 |
Q |
| |
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||||| |||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
15773355 |
ccttctaacattttcaccacaacactcattataggccttaattctggcctatattgaacacaccataaagctaccttaatcattctctcagcaatctctt |
15773256 |
T |
|
| Q |
399 |
tatttttctcctctattccacaaactatcattgcctcctccaatagtccagcatcaaattttttccaaacccaaattggaaaccactcttggctttcagt |
498 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15773255 |
tatttttctcttctattccacaaactatcattgcctcccccaaaagtccagcatctttttttttccaaacccaaattggaaaccactcttggctttcagt |
15773156 |
T |
|
| Q |
499 |
gtttttaatgtcaaggtttcttctcctacctaaaatttcaaataatagcataccaaaactataaacatcacatttatgagttataggaaatggcatccaa |
598 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15773155 |
gtttttaatggcaaggtttcttctcctacctataatttcaaataatagcataccaaaactataaacatcacatttatgagttataggaaatggcatccaa |
15773056 |
T |
|
| Q |
599 |
agttcaggtgcggcgtagccaggcgtccccct |
630 |
Q |
| |
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||||||||||||||||| |||||||||||||| |
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| T |
15773055 |
agttcaggtgcggcgtaaccaggcgtccccct |
15773024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 95 - 630
Target Start/End: Original strand, 15794412 - 15794944
Alignment:
| Q |
95 |
ttccatcaggctgtgctagatgccaattcaatctcatacttcctcataataggagtagcacatacaatgctggaatcacttaccataacagaagaaacac |
194 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15794412 |
ttccatcactctgtgctagatgccaattcaatctcatacttcctcataataggagtagcacatacaatgttggaatcacttaccataacagaagaaacac |
15794511 |
T |
|
| Q |
195 |
cagttgtgtatgtatttaactcttgctctgaatgagtagtagtaaacttagtcccatcaatcaaatgttgaaaagggttaaaagtctttggaatttctaa |
294 |
Q |
| |
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|||||| || |||||| ||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15794512 |
tagttgtataagtatttgactcttggtctgaatgagttgta---aacttagtctcatcaatcaaatgttgaaatgggttaaaagtctttggaatttctaa |
15794608 |
T |
|
| Q |
295 |
tgaaccttccaacattttcataacatcactcatcataggccttaattcttgcctatattgaacacacaataaagctaccttaaccattctctcagcaatt |
394 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15794609 |
tgaaccttccaacattttcacaacatcactcatcataggccttaattgttgcctatattgaacacaccataaagctaccttaaccattctctcagcaatc |
15794708 |
T |
|
| Q |
395 |
tctctatttttctcctctattccacaaactatcattgcctcctccaatagtccagcatcaaattttttccaaacccaaattggaaaccactcttggcttt |
494 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15794709 |
tctctatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaattttttccaaacccaaattggaaaccactcttggcttt |
15794808 |
T |
|
| Q |
495 |
cagtgtttttaatgtcaaggtttcttctcctacctaaaatttcaaataatagcataccaaaactataaacatcacatttatgagttataggaaatggcat |
594 |
Q |
| |
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| || ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15794809 |
ctgtatttttaatgtcaaggtttcttctcctaccaacaatttcaaataacagcataccaaaactataaacatcacatttatgagttataggaaatggcat |
15794908 |
T |
|
| Q |
595 |
ccaaagttcaggtgcggcgtagccaggcgtccccct |
630 |
Q |
| |
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|||||| |||||||| || || || ||||||||||| |
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| T |
15794909 |
ccaaagctcaggtgcagcataaccgggcgtccccct |
15794944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 248 - 630
Target Start/End: Complemental strand, 15768775 - 15768393
Alignment:
| Q |
248 |
ccatcaatcaaatgttgaaaagggttaaaagtctttggaatttctaatgaaccttccaacattttcataacatcactcatcataggccttaattcttgcc |
347 |
Q |
| |
|
|||||||||| || ||||||||| || |||| ||||| |||||| | | ||||||||||||||| | ||| ||||||| |||| ||| ||||| ||| |
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| T |
15768775 |
ccatcaatcatatattgaaaaggattcaaaggctttgaaatttcaactaaaccttccaacatttgtaccacaacactcattttaggtcttgattctggcc |
15768676 |
T |
|
| Q |
348 |
tatattgaacacacaataaagctaccttaaccattctctcagcaatttctctatttttctcctctattccacaaactatcattgcctcctccaatagtcc |
447 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||| |||||| || | || | || | || | |
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| T |
15768675 |
tatattgaacacatgccaaagctaccttaaccattctctctacaatctccatatttttctcctctatcccacaagctgctaccaattcattcacttgttc |
15768576 |
T |
|
| Q |
448 |
agcatcaaattttttccaaacccaaattggaaaccactcttggctttcagtgtttttaatgtcaaggtttcttctcctacctaaaatttcaaataatagc |
547 |
Q |
| |
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|||||| ||||||||||||||||| || |||||||| ||||||||||| | | || | ||| |||||||||||||||||| ||||||||||| ||| |
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| T |
15768575 |
agcatcgaattttttccaaacccatatcggaaaccattcttggctttctgcgaggtttacatcatggtttcttctcctacctataatttcaaatagtagt |
15768476 |
T |
|
| Q |
548 |
ataccaaaactataaacatcacatttatgagttataggaaatggcatccaaagttcaggtgcggcgtagccaggcgtccccct |
630 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| |||||||||||||||||| |||||||| || || || ||||||||||| |
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|
| T |
15768475 |
ataccaaaactataaacgtcacacttgtgagttacaggaaatggcatccaaagctcaggtgctgcataaccgggcgtccccct |
15768393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 575
Target Start/End: Complemental strand, 15793342 - 15793294
Alignment:
| Q |
527 |
cctaaaatttcaaataatagcataccaaaactataaacatcacatttat |
575 |
Q |
| |
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|||| |||||||||||| || ||||||||||||||||||||||| |||| |
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|
| T |
15793342 |
cctacaatttcaaataaaagaataccaaaactataaacatcacacttat |
15793294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 575
Target Start/End: Complemental strand, 15789149 - 15789093
Alignment:
| Q |
519 |
ttctcctacctaaaatttcaaataatagcataccaaaactataaacatcacatttat |
575 |
Q |
| |
|
|||| ||||||| ||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
15789149 |
ttcttctacctacaatttcaaatagaacaataccaaaactataaacatcgcatttat |
15789093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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