View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3065_low_31 (Length: 244)

Name: NF3065_low_31
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3065_low_31
NF3065_low_31
[»] chr7 (2 HSPs)
chr7 (67-244)||(7095020-7095198)
chr7 (33-65)||(7092019-7092051)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 67 - 244
Target Start/End: Original strand, 7095020 - 7095198
Alignment:
Q  67 tcaaagtatattgccgacatttttaaacgaggtcatctttctaattatagataatcaaatatccatcgtgagctcaatgtgaagtatgcttcatctaatc 166  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||    
T  7095020 tcaaagtatattgccgacatttttaaatgaggtcatctttctaattatcgatactcaaatatccctcgtgagctcaatatgaagtatgcttcatctaatc 7095119  T
Q  167 gtgtcctttgaaccattattatttatatatttcgatttc-ttgcattatcaagacttttactatctattaaaatactct 244  Q
    ||||| |||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7095120 gtgtcatttggaacattattatttatacatttcgatttcattgcattatcaagacttttactatctattaaaatactct 7095198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 7092019 - 7092051
Alignment:
Q  33 agaagtctattgacgttgtctacttctttttca 65  Q
    ||||||||||||||||||||| |||||||||||    
T  7092019 agaagtctattgacgttgtctgcttctttttca 7092051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University