View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_32 (Length: 240)
Name: NF3065_low_32
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 7352933 - 7352710
Alignment:
| Q |
17 |
acatcatatgtatttattaacaagtaactaatgcatgatattttattggtaactctttattacgaataccccttttccataatnnnnnnntatatgttag |
116 |
Q |
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| T |
7352933 |
acatcatatgtatttattaacaagtaactaatgcatgatattttattggtaactctttattacgaataccccttttccataataaaaaaatatctgttag |
7352834 |
T |
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| Q |
117 |
tataaaacaaactgttacctggcattagttagatcattcactcctgggatcaaattttcattgatagttccctccatgtcaaaaggaatgtgaagaatgt |
216 |
Q |
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| T |
7352833 |
tataaaacaaagtgttacctggcatcagatagatcattcactcctgtgatcaaattttcactgatagtttcctccatgtcaaaaggaatgtgaagaaggt |
7352734 |
T |
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| Q |
217 |
gaagtcaggaaaggttagtttgtt |
240 |
Q |
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| T |
7352733 |
gaagtcaggaaaggttagtttgtt |
7352710 |
T |
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