View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_33 (Length: 239)
Name: NF3065_low_33
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 37993877 - 37993667
Alignment:
| Q |
15 |
aagggtgctgacacggtaggtttgtttgtcgcaaaaaacaccataccatgttccgttgcagcagtcggtagttgaatcccacgaagagagtttggttggg |
114 |
Q |
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| T |
37993877 |
aagggtgctgacacggtaggtttgtttgtcgcaaaaaacaccataccatgttccgttgcagcagtcggtagttgaatcccatgaagagagtttggttggg |
37993778 |
T |
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| Q |
115 |
ttgccaaattgttttttgatttgaaagagggnnnnnnngtcatgtggattgcattgttctgagagtgaaggaatgaaaagatgtgtggttagtattagga |
214 |
Q |
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| T |
37993777 |
ttgccaaattgttttttgatttgaaagagggtttttttgtcatgtggattgcattgttctgagagtgaaggaatgaaaagatgtgtggttaggattagga |
37993678 |
T |
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| Q |
215 |
ggagaagtaat |
225 |
Q |
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| T |
37993677 |
ggagaagtaat |
37993667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 37697752 - 37697799
Alignment:
| Q |
90 |
atcccacgaagagagtttggttgggttgccaaattgttttttgatttg |
137 |
Q |
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| T |
37697752 |
atcccatgaagagagtttggttgggttgccaaattcttttttgatttg |
37697799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 38013350 - 38013198
Alignment:
| Q |
69 |
gttgcagcagtcggtagttgaatcccacgaagagagtttggttgggttgccaaattgttttttgatttgaaagagggnnnnnnngtcatgtggattgcat |
168 |
Q |
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| T |
38013350 |
gttgcagcagtctgtgtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctgggttgcag |
38013251 |
T |
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| Q |
169 |
tgttctgagagtgaaggaatgaaaagatgtgtggttagtattaggaggagaag |
221 |
Q |
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| T |
38013250 |
ttttctgagtgtgaaggaatgaagtgatttgtggttaggattatgagtagaag |
38013198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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