View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_35 (Length: 238)
Name: NF3065_low_35
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 11460723 - 11460604
Alignment:
| Q |
1 |
catataactcagagaaaactttaacataattgtgtattacactaacccaatcaaaatacacccaagagtagttaaaaataatgaaatgttgaacactata |
100 |
Q |
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| T |
11460723 |
catataactcggagaaaactttaacataattgtgtattacacaaacccaatcaaaatacacccaagagtagttaaaaataatgaaatgttgaacactata |
11460624 |
T |
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| Q |
101 |
ccatacagagatatagaatc |
120 |
Q |
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| T |
11460623 |
ccatacagagatatagaatc |
11460604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 11461204 - 11461087
Alignment:
| Q |
1 |
catataactcagagaaaactttaacataattgtgtattacactaacccaatcaaaatacacccaagagtagttaaaaataatgaaatgttgaacactata |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||| ||||| | |
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| T |
11461204 |
catataactcggagaaaactttaacataattgtgtattacactagcccaatcaaactacacctaagagtagttaaaaataatg--gtgttgatcactaaa |
11461107 |
T |
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| Q |
101 |
ccatacagagatatagaatc |
120 |
Q |
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||||||||||||| |||||| |
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| T |
11461106 |
ccatacagagataaagaatc |
11461087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 18397001 - 18397111
Alignment:
| Q |
1 |
catataactcagagaaaactttaacataattgtgtattacactaacccaatcaaaatacacccaagagtagttaaaaataatgaaatgttgaacactata |
100 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||| ||||| | |
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| T |
18397001 |
catataacttggagaaaactttaagataattgtgtattacactagcccaatcaaactacacctaagagtagttaaaaataatg--gtgttgatcactaaa |
18397098 |
T |
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| Q |
101 |
ccatacagagata |
113 |
Q |
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| T |
18397099 |
ccatacagagata |
18397111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 11460553 - 11460502
Alignment:
| Q |
170 |
taagatagaaaggctccaaagtagtttagaaacttgcatggtcctttgtatg |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11460553 |
taagatagaaaggctcgaaagtagtttagaaacttgcatggtcctttgtatg |
11460502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 11461044 - 11460993
Alignment:
| Q |
170 |
taagatagaaaggctccaaagtagtttagaaacttgcatggtcctttgtatg |
221 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11461044 |
taagatagaaagactccaaagtagtttagaaacttgcatggtcctttgtatg |
11460993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 18397160 - 18397211
Alignment:
| Q |
170 |
taagatagaaaggctccaaagtagtttagaaacttgcatggtcctttgtatg |
221 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
18397160 |
taagatagaaagactccaaagtagtttagaaacttgcacggtcctttgtatg |
18397211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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