View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_4 (Length: 550)
Name: NF3065_low_4
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 542
Target Start/End: Original strand, 31607217 - 31607743
Alignment:
| Q |
16 |
caggtaaagctcacacaaaacgacacattcaatagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttt |
115 |
Q |
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| T |
31607217 |
caggtaaagctcacacaaaacgacacattcagtagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttt |
31607316 |
T |
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| Q |
116 |
tacctatgtatgtgaccaggattggtggatccttgggcagcaatattgatgggagctttgtccggctcaattccatggtacacgatgatggtgttgcaca |
215 |
Q |
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| T |
31607317 |
tacctatgtatgtgacaaggattggtggatccatgggcagcaatattgatgggagctttgtccggttcaattccatggtacacgatgatggtgttgcaca |
31607416 |
T |
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| Q |
216 |
aaagatcgtcattctttcaaagtgtagatgatacattaggagtctttcacactcatgctgtggctggtattcttgggggaatcctttctggtgtgtttgc |
315 |
Q |
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| T |
31607417 |
aaaaatcaccattctttcaaagtgtagatgatacattaggagtctttcacactcatgctgtggctggtattcttgggggaatcctttctggtgtgtttgc |
31607516 |
T |
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| Q |
316 |
caaacctaaacttttgaggattctctatggtccttatgggtctggcttattgtatagttattttgatgataatataggtcaaggaatcaagcaaatgtgg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607517 |
caaacctaaacttttgaggattctctatggtccttatgggtctggcttattgtatagttattttgatgataatataggtcaaggaatcaagcaaatgtgg |
31607616 |
T |
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| Q |
416 |
taccaattattaggagcagtttttattactatttggaatgttgttattactagtctgatttgtattcttttaaatcgctttgtgaatcttcgaatgcaag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607617 |
taccaattattaggagcagtttttattactatttggaatgttgttattactagtctgatttgtattcttttaaatcgctttgtgaatcttcgaatgcaag |
31607716 |
T |
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| Q |
516 |
aagaagagcttgaggttggtgatgatg |
542 |
Q |
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| T |
31607717 |
aagaagaccttgaggttggtgatgatg |
31607743 |
T |
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