View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_5 (Length: 508)
Name: NF3065_low_5
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Complemental strand, 51526196 - 51525722
Alignment:
| Q |
16 |
agatgaaatccacagtaccactaattttgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgata |
115 |
Q |
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| T |
51526196 |
agatgaaatccacagtaccactaattttgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgata |
51526097 |
T |
|
| Q |
116 |
aaatactgagaggtcagagtctgatcttaacgccactgcttggtgcttctcggcacctgcggtgttctgaaatgaaatgtcgcgtgctatgaaccctcta |
215 |
Q |
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| T |
51526096 |
aaatactgagaggtcagagtctgatcttaacgccactgcttggtgcttctcggcacctgcggtgttctgaaatgaaatgtcgcgtgctatgaaccctcta |
51525997 |
T |
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| Q |
216 |
ccacttacagctgcacatgcccatacataaagaagaaattgtaatgaaaattaaggtatgataatcgggtgagacttgcatttcactaatgaagatcaag |
315 |
Q |
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| T |
51525996 |
ccacttacagctgcacatgcccatacataaagaagaaattgtaatgaaaattaagatatgataatcgggtgagacttgcatttcactaatgaagatcaag |
51525897 |
T |
|
| Q |
316 |
aaaattataattgcagcacatgctaatttaatgttgcttattattagttagttatatgtatgcattatgttagttaatgtttacaataataggaccctag |
415 |
Q |
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| T |
51525896 |
aaaattataattgcagcacatgctaatttaatgttgcttattattagttagttatatgtatgcattatgttagttaatgtttacaataataggaccctag |
51525797 |
T |
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| Q |
416 |
tgagactcatgattcttgaatgttgtgtgttgaaattgtattaaacacttccttgaattttatggggtgattgtt |
490 |
Q |
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| T |
51525796 |
tgagactcttgattcttgaatgttgggtgttgaaattgtattaaacacttccttgaattttatggggtgattgtt |
51525722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 75 - 358
Target Start/End: Complemental strand, 51531884 - 51531600
Alignment:
| Q |
75 |
gtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatcttaacgccactgcttggtgcttctcggcacctg |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| | |||||||| ||||| |
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| T |
51531884 |
gtatataggctatcttgataaccgaatatcccacaccgataaaatacagagaggtcagagtccgatcttaaagccactgcttgttccttctcgggacctg |
51531785 |
T |
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| Q |
175 |
cggtgttctgaaatgaaatgtcgcgtgctatgaaccctctaccacttacagctgcacatgcccatacataaagaagaaattgtaatgaaaattaaggtat |
274 |
Q |
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| T |
51531784 |
cggtgttttgaaatgaaatgttgcatgctatgaaccctctaccattaacagctgcacatgtccatacataaagaagaaaataaaatgaaaattaaggtgt |
51531685 |
T |
|
| Q |
275 |
gataatcgggtgagacttgcatttca-ctaatgaagatcaagaaaattataattgcagcacatgctaatttaatgttgcttatta |
358 |
Q |
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| T |
51531684 |
gagaattgaacctgacttacatttcagctattgaagattaagaaaattataattgcagaacatgataatataatgttacttatta |
51531600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 51531466 - 51531422
Alignment:
| Q |
375 |
atgcattatgttagttaatgtttacaataataggaccctagtgag |
419 |
Q |
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| T |
51531466 |
atgcattatgtcagttaatgtttacaataataaggccctactgag |
51531422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 19509817 - 19510033
Alignment:
| Q |
16 |
agatgaaatccacagtaccactaattttgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgata |
115 |
Q |
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|||| |||||||| || ||||| ||||||||||| ||| |||| || ||||| || || || || ||||| ||||| ||||| || |||||||| ||||| |
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| T |
19509817 |
agataaaatccaccgtgccacttattttgcattctcggaagaattggcgcattgtatgcgtgtagaggctgtcttggtaaccaaaaatcccacatcgata |
19509916 |
T |
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| Q |
116 |
aaatactgagaggtcagagtctgatcttaacgccactgcttggtgcttctcggcacctgcggtgttctgaaatgaaatgtcgcgtgctatgaaccctcta |
215 |
Q |
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| T |
19509917 |
gaatacagagaggtcagagtcggatcttagtgccactgcttggtgcttctcaggacctgcagtgttctgaaaagagatgtctcttgctatgaatcctcta |
19510016 |
T |
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| Q |
216 |
ccacttacagctgcaca |
232 |
Q |
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| T |
19510017 |
ccactaacagctgcaca |
19510033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 1606529 - 1606599
Alignment:
| Q |
87 |
tcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatcttaacgccactgcttg |
157 |
Q |
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||||||||||| |||| |||||||||| || |||||||| || ||| ||||||||| |||||||||||| |
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| T |
1606529 |
tcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgccactgcttg |
1606599 |
T |
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