View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_6 (Length: 494)
Name: NF3065_low_6
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 380
Target Start/End: Original strand, 15679857 - 15680235
Alignment:
| Q |
4 |
tgggttgctatttttgtaattttatttgagatgatgaatatatttgtatattgaggcgtttttgtggatgcatgaaataggtgttgcaccattaa----a |
99 |
Q |
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| T |
15679857 |
tgggttgctatttttgtaattttatttgagatgatgaatatatttgtatattgaagcgtttttgtggatgcatgaaataggtgttgcaccattaattaaa |
15679956 |
T |
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| Q |
100 |
tctttgttcttttattttattttgttgtgtgttcatcaaagatctatagatgcatgagttagttgttggctttannnnnnnnccaacagttgtatcatcg |
199 |
Q |
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| T |
15679957 |
tctttgttcttttattttattttgttgtgtgttcatcaaagatctatagatgcatgagttagttgttggcgttacttttt--ccaacagttgtatcatca |
15680054 |
T |
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| Q |
200 |
gagctaatggtttggagggaccggctaagaattggtatgactaggtgatcgttgcaaatagggatgaaaatacgttagattgagctaagctttgcaagaa |
299 |
Q |
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| T |
15680055 |
gagataatggtttgaatggactggctaagaattggtatgactaggtgatcgttgcaaatagggatgaaaatacgttagattgagctaagctttgcaaaaa |
15680154 |
T |
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| Q |
300 |
cttcaaaattcttccatatgtttttgttcaaaatttcttaacaggaatgagcgaaaatatatggatgcaatatggctcttg |
380 |
Q |
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| T |
15680155 |
ctttaaaattcttccatttgtttttgttcaaaatttcttaacaggaatgagcgaaaacagatgggtgcaatatcgctcttg |
15680235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 388 - 484
Target Start/End: Original strand, 15680355 - 15680458
Alignment:
| Q |
388 |
tataagtttaaatagat-aacgaactaataaaacaataaaaat------tcaaattttaatatataagtacatacatttctttcctcttatcttttacat |
480 |
Q |
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| T |
15680355 |
tataagtttaaataaattaacgaactaataaaaccatgaaaattcaaattcaaattttaatttataagtacatacatttctttcctcttatcttttacat |
15680454 |
T |
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| Q |
481 |
tcat |
484 |
Q |
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|||| |
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| T |
15680455 |
tcat |
15680458 |
T |
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