View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_7 (Length: 461)
Name: NF3065_low_7
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 1967924 - 1967494
Alignment:
| Q |
18 |
gttgttagactcgtcatcttcctgtgattcatatttaagaggggacattctcgtattcgactttccctgcatcaatgttaaaaacaatcatgagatcaag |
117 |
Q |
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| T |
1967924 |
gttgttagactcgtcatcttcctgtgattcatatttaagaggggacattctcgtattcgactttccctgcatcaatgttaaaaacaatcatgagatcaag |
1967825 |
T |
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| Q |
118 |
caaaattgcagtgaatagtaataataataattaacatgtatgttttcttaaaatatgttaccggcaacgatatatctccttgagcattatactctggtgt |
217 |
Q |
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| T |
1967824 |
caaaattgcagtgaatagtaataataataattaacatgtatgttttcttaaattatgttaccggcaacgatatatctccttgagcattatactctggtgt |
1967725 |
T |
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| Q |
218 |
ttccaatgctttggtatttcttgctccccttgaagcagttactggcccatgtcctttaacagcttctgtattttttctgatcatatcaacaaataaataa |
317 |
Q |
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| T |
1967724 |
ttccaatgctttggtatttcttgctccccttgaagcagttactggcccatgtcctttaacagcttctgtattttttctgatcatatcaacaaataaataa |
1967625 |
T |
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| Q |
318 |
atatccatgaatttgcacgacacttttaataaagcatcaaactatacaagggaattattttggggaaggttagtaatatcaagaaaatttatatttaaaa |
417 |
Q |
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| T |
1967624 |
atatccatgaatttgcacgacacttttaataaagcatcaaactatacaagggaattattttggggaaggttagtaatatcaagaaaatttatatttaaaa |
1967525 |
T |
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| Q |
418 |
ttctatgtatattgaaataccttgttgcttc |
448 |
Q |
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| T |
1967524 |
ttctatgtatattgaaataccttgttgcttc |
1967494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 40252718 - 40252662
Alignment:
| Q |
188 |
tatatctccttgagcattatactctggtgtttccaatgctttggtatttcttgctcc |
244 |
Q |
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| T |
40252718 |
tatatcacctcgagcattatactctggtgtttccaatgctttggtatttcttgctcc |
40252662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 40252783 - 40252728
Alignment:
| Q |
28 |
tcgtcatcttcctgtgattcatatttaagaggggacattctcgtattcgactttcc |
83 |
Q |
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||||||||||| |||||||||||||||||| | |||||||| |||||||||||||| |
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| T |
40252783 |
tcgtcatcttcttgtgattcatatttaagatgagacattctagtattcgactttcc |
40252728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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