View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_low_8 (Length: 427)
Name: NF3065_low_8
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 48631335 - 48631729
Alignment:
| Q |
13 |
tgagatttccttctgaagtggacattgagacactaatcaaacgaatatggataaactagatacatactccttccaatatatgttgctcacgatatccaag |
112 |
Q |
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| T |
48631335 |
tgagatttccttctgaagtggacattgagacactaatcaaacgaatatggataaactagatacatactccttccaatatatgttgctcacgatatccaag |
48631434 |
T |
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| Q |
113 |
gacattgacttaatgtagctaggaggtcattccattttcattgctcaaaaactagaaatgtcttaatccacattgatttttgatcataattaaactaatg |
212 |
Q |
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| T |
48631435 |
gacattgacttaatgtagctaggaggtcattccattttcattgctcaaaaactagaaatgtcttaatccacattgatttttgatcataattaaactaatg |
48631534 |
T |
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| Q |
213 |
ccggctagtagaatcagaaactgcactcaaagacctaaacaagaaactattatgtctcctcagaacggggaagaatttttgtttagttgaaagaaataaa |
312 |
Q |
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| T |
48631535 |
ccggctagtagaatcagaaactgcactcaaagacctaaacaagaaactattatgtctcctcagaacggggaagaatttttgtttagttgaaagaaataaa |
48631634 |
T |
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| Q |
313 |
caatgtttatgaccttatattatagttagtgtatgacatatatagtgaatgtgggaaacaaacccaacatgtctcaaattcacaaagcccacgct |
407 |
Q |
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| T |
48631635 |
caatgtttatgaccttatattatagttagtgtatgacatatatagtgaatgtgggaaacaaacccaacatgtctcaaattcacaaagcccacgct |
48631729 |
T |
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