View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3067_high_1 (Length: 593)

Name: NF3067_high_1
Description: NF3067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3067_high_1
NF3067_high_1
[»] chr1 (5 HSPs)
chr1 (193-570)||(51805530-51805880)
chr1 (159-194)||(24976734-24976769)
chr1 (159-192)||(51976264-51976297)
chr1 (160-192)||(38618230-38618262)
chr1 (160-192)||(50355012-50355044)
[»] chr6 (2 HSPs)
chr6 (8-158)||(10606380-10606530)
chr6 (160-192)||(20687464-20687496)
[»] chr8 (1 HSPs)
chr8 (9-192)||(42638148-42638343)
[»] chr4 (2 HSPs)
chr4 (160-193)||(55511901-55511934)
chr4 (160-192)||(20681722-20681754)
[»] chr2 (3 HSPs)
chr2 (160-193)||(26487861-26487894)
chr2 (160-192)||(6851912-6851944)
chr2 (160-192)||(6852825-6852857)
[»] chr7 (1 HSPs)
chr7 (160-192)||(42344230-42344262)
[»] chr5 (1 HSPs)
chr5 (160-192)||(43589178-43589210)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 193 - 570
Target Start/End: Complemental strand, 51805880 - 51805530
Alignment:
Q  193 ataagtaggatctagtatatggaatatacgtacgtcacaactatttactttttcttaccttatatctgcacaaggcaatttaatgagggctggcatcaca 292  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||           |||||||||    
T  51805880 ataagtaggatgtagtatatggaatatacttacgtcacaactatttactttttcttaccttatatctgtacaaggcaatt-----------ggcatcaca 51805792  T
Q  293 aatggttgctcagatgccagctcaaaaagctttgatgatccatccaagcataagcaagtgtcattgttttgtaagattagcataaactagcaggaactac 392  Q
    |||| ||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||  |||||||||||||    
T  51805791 aatgcttgctcagatgccagctcaaaaagctttgatgatccat----------------gtcattgttttgtaagattagcataagttagcaggaactac 51805708  T
Q  393 tacacaattcccttttcagctttgtctaataccatataacttttgatcaaacctatgcagaatttattaaaaatcgactaaatttcaagtacgattaaaa 492  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51805707 tacacaattcacttttcagctttgtctaataccatataactttttatcaaatctatgcagaatttattaaaaatcgactaaatttcaagtacgattaaaa 51805608  T
Q  493 atgattattactgaattagcttgactaaccattattaattaattaaatttacaagttgtagcagtgagatagttattt 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51805607 atgattattactgaattagcttgactaaccattattaattaattaaatttacaagttgtagcagtgagatagttattt 51805530  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 24976734 - 24976769
Alignment:
Q  159 aaaagaattcctcctacctaccctaaatgccaccat 194  Q
    |||||||||||||||||| |||||||||||||||||    
T  24976734 aaaagaattcctcctacccaccctaaatgccaccat 24976769  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 51976297 - 51976264
Alignment:
Q  159 aaaagaattcctcctacctaccctaaatgccacc 192  Q
    |||||||||||||||||| |||||||||||||||    
T  51976297 aaaagaattcctcctacccaccctaaatgccacc 51976264  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 38618262 - 38618230
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacc 192  Q
    ||||||||||||||||| |||||||||||||||    
T  38618262 aaagaattcctcctacccaccctaaatgccacc 38618230  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 50355012 - 50355044
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacc 192  Q
    ||||||||||||||||| |||||||||||||||    
T  50355012 aaagaattcctcctacccaccctaaatgccacc 50355044  T

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Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 10606530 - 10606380
Alignment:
Q  8 gaaatgaaagaaactaagggtgctaacgtgaaaaaacagaagcatagaccagcttgggtgtagaagcaagtcattaaaataagataattaattttattan 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||     
T  10606530 gaaatgaaagaaactaagggtgctaacgtgaaaaaacagaagcatagaccggcttaggtgtagaagcaagtcattaaaataagataattaattttattat 10606431  T
Q  108 nnnnnnaagcttgacctgttttaactgccatctgtctagtaaaatgagact 158  Q
          |||||||||||||||||| |||||||| |||||||||||||||||    
T  10606430 ttttttaagcttgacctgttttaattgccatctctctagtaaaatgagact 10606380  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 20687496 - 20687464
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacc 192  Q
    |||| ||||||||||||||||||||||||||||    
T  20687496 aaagtattcctcctacctaccctaaatgccacc 20687464  T

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Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 42638343 - 42638148
Alignment:
Q  9 aaatgaaagaaactaagggtgctaacgtgaaaaaacagaagcatagaccagcttgggtgtagaagcaagtcattaaaataagataattaattttattann 108  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  42638343 aaatgaaagaaactaagggtcctaacgtgaaaaaacagaagcatagaccagcttgggtgtagaagcaagtcattaaaataagataattaattttattatt 42638244  T
Q  109 nnnnnaagcttgacctgttttaactgccatctgtctagtaaaatgagact------------aaaagaattcctcctacctaccctaaatgccacc 192  Q
         ||||||||||||||||||| ||||||| |||| ||||| ||||||            |||||||||||||||||| |||||||||||||||    
T  42638243 tttttaagcttgacctgttttaacggccatctatctaataaaaggagactttctcatggtggaaaagaattcctcctacccaccctaaatgccacc 42638148  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 55511934 - 55511901
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacca 193  Q
    |||| |||||||||||||||||||||||||||||    
T  55511934 aaagtattcctcctacctaccctaaatgccacca 55511901  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 20681754 - 20681722
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacc 192  Q
    ||||||||||||||||| |||||||||||||||    
T  20681754 aaagaattcctcctacccaccctaaatgccacc 20681722  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 26487861 - 26487894
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacca 193  Q
    ||||||||||||||||| ||||||||||||||||    
T  26487861 aaagaattcctcctacccaccctaaatgccacca 26487894  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 6851944 - 6851912
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacc 192  Q
    ||||||||||||||||| |||||||||||||||    
T  6851944 aaagaattcctcctacccaccctaaatgccacc 6851912  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 6852825 - 6852857
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacc 192  Q
    ||||||||||||||||| |||||||||||||||    
T  6852825 aaagaattcctcctacccaccctaaatgccacc 6852857  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 42344230 - 42344262
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacc 192  Q
    ||||||||||||||||| |||||||||||||||    
T  42344230 aaagaattcctcctacccaccctaaatgccacc 42344262  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 43589178 - 43589210
Alignment:
Q  160 aaagaattcctcctacctaccctaaatgccacc 192  Q
    ||||||||||||||||| |||||||||||||||    
T  43589178 aaagaattcctcctacccaccctaaatgccacc 43589210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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