View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3067_high_6 (Length: 262)
Name: NF3067_high_6
Description: NF3067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3067_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 12550003 - 12549764
Alignment:
| Q |
10 |
agatgaagtctgctttagactgattatttcaaggactagaaagtactcgagattgcaaaatatttaatcatgtaatacaacaactttggtgcacatgcta |
109 |
Q |
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| T |
12550003 |
agatgaagtctgctttagactgattatttcaaggactagaaagtactcgagattgcagaatatttaatcatgtaatacaacaacgttggtgcacatgcta |
12549904 |
T |
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| Q |
110 |
ctatatgaagcattaaataacgatt--nnnnnnngggtaaaattagttatttaagnnnnnnncttccaacttagt-ttttaagtatggaaatgtagtttt |
206 |
Q |
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| T |
12549903 |
ctatatgaagcattaaataacgattaaaaaaaaagggtaaaattagttatttaagtttttttcttccaacttagtcttttaagtatggaaatgtagtttt |
12549804 |
T |
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| Q |
207 |
cttttggagttttccgataacgtcaaaaaatacttatgtg |
246 |
Q |
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| T |
12549803 |
cttttggagttttccgataacgtcaaaaaatacttatgtg |
12549764 |
T |
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