View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3067_low_3 (Length: 408)
Name: NF3067_low_3
Description: NF3067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3067_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 47918799 - 47918429
Alignment:
| Q |
18 |
acatcaatgttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagtct |
117 |
Q |
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| T |
47918799 |
acatcaatgttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagtct |
47918700 |
T |
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| Q |
118 |
ggaacaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaacgtgagaaaatggaaagn |
217 |
Q |
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| T |
47918699 |
ggaacaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaatat----acataaaaa-- |
47918606 |
T |
|
| Q |
218 |
nnnnnntataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagcttaattagtacctga |
317 |
Q |
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| T |
47918605 |
----aatataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagcttaattagtacctga |
47918510 |
T |
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| Q |
318 |
attatgccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctg |
398 |
Q |
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| T |
47918509 |
attatgccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctg |
47918429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 6932600 - 6932520
Alignment:
| Q |
84 |
acagattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataa---aaaagagtttatacataa |
161 |
Q |
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| T |
6932600 |
acagattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaagagtttatacataa |
6932520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 26 - 348
Target Start/End: Original strand, 29918375 - 29918694
Alignment:
| Q |
26 |
gttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagtctggaacaaa |
125 |
Q |
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| T |
29918375 |
gtttttatattgatgtctttgcaactgcgaccgcaatggattgcataagccgcatttaacagattcaatggattaaaccagataacaagtctggaacaaa |
29918474 |
T |
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| Q |
126 |
agaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaacgtgagaaaatggaaagnnnnnnnta |
225 |
Q |
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| T |
29918475 |
agaatacatcggcaat--aaaagagtttatacataaaaagtc-ttcacttcacatagaattggacataaataggtgtgagaaaatggaaa---ataattt |
29918568 |
T |
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| Q |
226 |
taatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagct---taattagtacctgaattat |
322 |
Q |
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| T |
29918569 |
gaatcttgatttatattactaattctctaactgaatttttttataatttcatagatcacagcagcaatttcaaaagtttagtacttagtacctgaattat |
29918668 |
T |
|
| Q |
323 |
gccggaatggtcaccctttgagtgct |
348 |
Q |
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||| | |||||||||| ||||||||| |
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| T |
29918669 |
gccagcatggtcaccccttgagtgct |
29918694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 29918750 - 29918803
Alignment:
| Q |
345 |
tgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctg |
398 |
Q |
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| T |
29918750 |
tgctttttgaacctttataggctcaacaggttcatcacccctattttgtctctg |
29918803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 508662 - 508582
Alignment:
| Q |
84 |
acagattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataa---aaaagagtttatacataa |
161 |
Q |
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| T |
508662 |
acagattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaagagtttatacataa |
508582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 26291271 - 26291192
Alignment:
| Q |
86 |
agattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataa----aaaagagtttatacataa |
161 |
Q |
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||||||||| ||| |||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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| T |
26291271 |
agattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaaagagtttatacataa |
26291192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 18290981 - 18290906
Alignment:
| Q |
86 |
agattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaa-taaaaaagagtttatacata |
160 |
Q |
| |
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||||||||| ||| |||||||||||||||| ||||||||||||||| | || || |||||| ||||||||||||| |
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| T |
18290981 |
agattcaattgactaaagaatataacaagtttggaacaaaagaatatattgggaattaaaaaggagtttatacata |
18290906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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