View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3067_low_4 (Length: 372)
Name: NF3067_low_4
Description: NF3067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3067_low_4 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 4875473 - 4875832
Alignment:
| Q |
9 |
ataattctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatct |
108 |
Q |
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| T |
4875473 |
ataattctgatctagatcatcactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatct |
4875572 |
T |
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| Q |
109 |
ttgtacctgttgtttatacatgaccnnnnnnnttgtcaataataagacattgatgttactccctccatccttaataataaacacacattgagaaaaagtt |
208 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4875573 |
ttgtacctgttgtttatacatgaccaaaaaaattgtcaataataagacattgatgttactccctccatccttaataataaacacacattgagaaaaagtt |
4875672 |
T |
|
| Q |
209 |
ttattcgtacatattagcccttatacaaattactagatgaatctagnnnnnnnnnnctttctaaacaaacctgtaattaatactactgaccttgtcttaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4875673 |
ttattcgtacatattagcccttatacaaattactagatgaatctagttttttt----tttctaaacaaacctgtaattaatactactgaccttctcttaa |
4875768 |
T |
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| Q |
309 |
aatatatatgaatattaatgtgctgctacgtacatactagctagctgactccatgcaatgtatt |
372 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4875769 |
aatatatatgaatattaatgtcctgctacgtacatactagctagctgactccatgcaatgtatt |
4875832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 4913798 - 4913916
Alignment:
| Q |
12 |
attctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttg |
111 |
Q |
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| T |
4913798 |
attctgaaatagatcattgatgttaaatgaggtggttaattgtctccaatcactggataattcacaaggcgaccagatgcggtcataaacatcatctttg |
4913897 |
T |
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| Q |
112 |
tacctgttgtttatacatg |
130 |
Q |
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| T |
4913898 |
tacctgttgtttgtacatg |
4913916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 4904672 - 4904793
Alignment:
| Q |
12 |
attctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttg |
111 |
Q |
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||||||||||||||||| | ||||||||||| || ||||||||||| ||||||||||||||||| |||| |||| || || |||| ||||||||||||| |
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| T |
4904672 |
attctgatctagatcatcattgttaagtgagatgattaatcgtctcgaatcactggataattcacaaggaaaccagatgcggtcataaacatcatctttg |
4904771 |
T |
|
| Q |
112 |
tacctgttgtttatacatgacc |
133 |
Q |
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||||| |||||| ||||||||| |
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| T |
4904772 |
tacctattgtttgtacatgacc |
4904793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 4925273 - 4925368
Alignment:
| Q |
20 |
ctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttgtacctgt |
118 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| || || |||| |||||||||||||||||||| |
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| T |
4925273 |
ctagagcattattgttaagtgaggtgcttaatcgtctccaatcact---tgattcataaggcgaccagatgcggtcataaacatcatctttgtacctgt |
4925368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 4776872 - 4776970
Alignment:
| Q |
32 |
tgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttgtacctgttgtttatacatga |
131 |
Q |
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|||||||||||||||||||||||||||||||| | ||| ||||||| ||||||| || |||| ||||||||||||||||||||||||| ||||||| |
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| T |
4776872 |
tgttaagtgaggtgcttaatcgtctccaatcaat---taactcataagaaaaccacatgcggtcataaacatcatctttgtacctgttgtttgtacatga |
4776968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 4890250 - 4890368
Alignment:
| Q |
12 |
attctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttg |
111 |
Q |
| |
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||||||| ||||||||| | ||||||||||||||||||||||| ||||||| || ||| | ||||| |||| || || ||| ||||||||||||| |
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| T |
4890250 |
attctgaactagatcatcattgttaagtgaggtgcttaatcgtgcccaatcaatg---aatccgtaaggaaaccagatgcggtcaaaaacatcatctttg |
4890346 |
T |
|
| Q |
112 |
tacctgttgtttatacatgacc |
133 |
Q |
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|||||||||||| ||||||||| |
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| T |
4890347 |
tacctgttgtttgtacatgacc |
4890368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 4996114 - 4995993
Alignment:
| Q |
12 |
attctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttg |
111 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||||||| | |||| |||||||||||| | | || |||| || || || | ||||||||||||| |
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| T |
4996114 |
attctgatgtagatcatcgctgttaagtgagctgcttaattttgcccaaccactggataatttaaagggaaaccagattcggtcgtaaacatcatctttg |
4996015 |
T |
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| Q |
112 |
tacctgttgtttatacatgacc |
133 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
4996014 |
tacctgttgtttgtacatgacc |
4995993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 4736524 - 4736439
Alignment:
| Q |
32 |
tgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttgtacctg |
117 |
Q |
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|||||||||||||||||| ||||||| ||||||||| ||| || |||| |||| || || |||| ||||||||||||||||||| |
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| T |
4736524 |
tgttaagtgaggtgcttagtcgtctcaaatcactgggtaaatcccaaggaaaccagatgcggtcataaacatcatctttgtacctg |
4736439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 4681099 - 4681067
Alignment:
| Q |
99 |
aacatcatctttgtacctgttgtttatacatga |
131 |
Q |
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| T |
4681099 |
aacatcatctttgtacctgttgtttgtacatga |
4681067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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