View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3068_high_6 (Length: 249)

Name: NF3068_high_6
Description: NF3068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3068_high_6
NF3068_high_6
[»] chr2 (2 HSPs)
chr2 (148-247)||(33634151-33634250)
chr2 (1-84)||(33634001-33634084)
[»] chr8 (2 HSPs)
chr8 (1-84)||(29191750-29191833)
chr8 (151-247)||(29191578-29191683)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 33634151 - 33634250
Alignment:
Q  148 tcgtgcgaacgaaatttcccactcgtcactcagtgagtttgatcttactgcaactgttcccgccatttgtttgaattatctcttttcttcttttctctcg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33634151 tcgtgcgaacgaaatttcccactcgtcactcagtgagtttgatcttactgcaactgttcccgccatttgtttgaattatctcttttcttcttttctctcg 33634250  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33634001 - 33634084
Alignment:
Q  1 gttgagatcggaggagaatcggaggaaaacggaggtggaggaggagatccatgtgccacgtggaggacggttacggaggcgaac 84  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33634001 gttgagatcggaggagaatcggaggaaagcggaggtggaggaggagatccatgtgccacgtggaggacggttacggatgcgaac 33634084  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29191833 - 29191750
Alignment:
Q  1 gttgagatcggaggagaatcggaggaaaacggaggtggaggaggagatccatgtgccacgtggaggacggttacggaggcgaac 84  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29191833 gttgagatcggaggagaaacggaggaaagcggaggtggaggaggagatccatgtgccacgtggaggacggttacggaggcgaac 29191750  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 29191683 - 29191578
Alignment:
Q  151 tgcgaacgaaatttcccactcgtcactcagtgagtttg---------atcttactgcaactgttcccgccatttgtttgaattatctcttttcttctttt 241  Q
    |||||| |||||||||||||||||||||||||||||||         |||| |||||||||||||||||||||| |||||||| |||| |||| | |||     
T  29191683 tgcgaaggaaatttcccactcgtcactcagtgagtttgttgttgttgatctcactgcaactgttcccgccatttttttgaattctctcctttccttttta 29191584  T
Q  242 ctctcg 247  Q
    ||||||    
T  29191583 ctctcg 29191578  T

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