View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3068_high_9 (Length: 233)
Name: NF3068_high_9
Description: NF3068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3068_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 53044088 - 53043869
Alignment:
| Q |
1 |
cttcaggcattgctgcattagttgtctgaggccaagaatcaaatttggacctgaacatcactgtttcaaatccttccattacgcagattatctgggattt |
100 |
Q |
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| T |
53044088 |
cttcaggcattgctgcattagttgtctgaggccaagaatcaaatttggacctgaacatcactgtttcaaatccttccattacgcggattatctgggattt |
53043989 |
T |
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| Q |
101 |
tggtcgattggtgctactgactagttcctgtttttaaccagcagaaacccaataatcattaacactcctaacaaatgctcaacaataccgagaagtaaag |
200 |
Q |
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| T |
53043988 |
tggtcgattggtgctactgactagttcctgtttttaaccagcagaaacccaataatcattaacactcctaacaaatgctcaacaataccgagaagtaaag |
53043889 |
T |
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| Q |
201 |
aagagaaattacatctgtag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
53043888 |
aagagaaattacatctgtag |
53043869 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 15963120 - 15963178
Alignment:
| Q |
24 |
gtctgaggccaagaatcaaatttggacctgaacatcactgtttcaaatccttccattac |
82 |
Q |
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|||||||||||||||||||| |||||| | |||| |||||||||||||||||| ||||| |
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| T |
15963120 |
gtctgaggccaagaatcaaacttggacttaaacaacactgtttcaaatccttcaattac |
15963178 |
T |
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