View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3068_low_12 (Length: 227)
Name: NF3068_low_12
Description: NF3068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3068_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 10499784 - 10499648
Alignment:
| Q |
6 |
atccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagtttcaactatagattagataatcaatt |
105 |
Q |
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| T |
10499784 |
atccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattgccatctttgaagtttcaactatagattagatagtcaatt |
10499685 |
T |
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| Q |
106 |
atggataaaaatggttagaaccttcgacgttatatgg |
142 |
Q |
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| T |
10499684 |
atggatgaaaatggttagaaccttcgacgtgatatgg |
10499648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 9998859 - 9998787
Alignment:
| Q |
8 |
ccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt |
81 |
Q |
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| T |
9998859 |
ccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt |
9998787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 10108625 - 10108553
Alignment:
| Q |
8 |
ccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt |
81 |
Q |
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| T |
10108625 |
ccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt |
10108553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 10229864 - 10229792
Alignment:
| Q |
8 |
ccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt |
81 |
Q |
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| T |
10229864 |
ccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt |
10229792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 10218606 - 10218539
Alignment:
| Q |
8 |
ccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttga |
76 |
Q |
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| T |
10218606 |
ccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttga |
10218539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 10233447 - 10233387
Alignment:
| Q |
20 |
aaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt |
81 |
Q |
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| T |
10233447 |
aaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatttttgaagttt |
10233387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 26825818 - 26825746
Alignment:
| Q |
8 |
ccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt |
81 |
Q |
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| T |
26825818 |
ccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt |
26825746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 26798077 - 26798010
Alignment:
| Q |
8 |
ccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttga |
76 |
Q |
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| T |
26798077 |
ccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttga |
26798010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 11484171 - 11484131
Alignment:
| Q |
10 |
acatctgactaaataataaatatacaaagaaaagtttcaca |
50 |
Q |
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| T |
11484171 |
acatctgacaaaataataaatatacaaagaaaagttgcaca |
11484131 |
T |
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