View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3068_low_2 (Length: 430)
Name: NF3068_low_2
Description: NF3068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3068_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 5569070 - 5568676
Alignment:
| Q |
19 |
tgaacatttcaaagtacaacctatcaaaggattatcttgaagtccaagaccgatcttgaactagtttaaaatctctccaatttgcgaaagcacgtccttc |
118 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5569070 |
tgaacatttcaaagtgcaacctatcaaaggattctcttgaagtcctaggccgatcttgccctagtttaaaatctctccaatttgcgaaagcacgtccttc |
5568971 |
T |
|
| Q |
119 |
attcatgttaggttctgatgataccgaggctcttattattgcaacaatgtcaagactaacccgtcttgatattaaaggaaatatgctcactaatgctggt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568970 |
attcatgttaggttctgatgataccgaggctcttattattgcaacaatgtcaacactaacccgtcttgatattaaaggaaatatgctcactaatgctggt |
5568871 |
T |
|
| Q |
219 |
ctcctcgccattcttgatggatgtcctcttctcgagtcgcttggcattgaggaatgttatcatctggatttgagtggcagtttaaggaagagatgccttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568870 |
ctcctcgccattcttgatggatgtcctcttctcgagtcgcttggcattgaggaatgttatcatctggatttgagtggcagtttaaggaagagatgccttg |
5568771 |
T |
|
| Q |
319 |
agcagataaaggatttacgtctgccagttcttgatagcaattattatcatgttatgtataatggcaattctaattgccattctttatgtggatta |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568770 |
agcagataaaggatttacgtctgccagttcttgatagcaattattatcatgttatgtataatggcaattctaattgccattctttatgtggatta |
5568676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 5574051 - 5573657
Alignment:
| Q |
19 |
tgaacatttcaaagtacaacctatcaaaggattatcttgaagtccaagaccgatcttgaactagtttaaaatctctccaatttgcgaaagcacgtccttc |
118 |
Q |
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|
||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5574051 |
tgaacatttcaaagtgcaacctatcaaaggattctcttgaagtcctaggccgatcttgccctagtttaaaatctctccaatttgcgaaagcacgtccttc |
5573952 |
T |
|
| Q |
119 |
attcatgttaggttctgatgataccgaggctcttattattgcaacaatgtcaagactaacccgtcttgatattaaaggaaatatgctcactaatgctggt |
218 |
Q |
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|
||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573951 |
attcatgttaggtactgatgataccgaggctcttataattgcaacaatgtcaacactaacccgtcttgatattaaaggaaatatgctcactaatgctggt |
5573852 |
T |
|
| Q |
219 |
ctcctcgccattcttgatggatgtcctcttctcgagtcgcttggcattgaggaatgttatcatctggatttgagtggcagtttaaggaagagatgccttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573851 |
ctcctcgccattcttgatggatgtcctcttctcgagtcgcttggcattgaggaatgttatcatctggatttgagtggcagtttaaggaagagatgccttg |
5573752 |
T |
|
| Q |
319 |
agcagataaaggatttacgtctgccagttcttgatagcaattattatcatgttatgtataatggcaattctaattgccattctttatgtggatta |
413 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573751 |
agcagataaaggatttaagactgccagttcttgatagcaattattatcatgttatgtataatggcaattctaattgccattctttatgtggatta |
5573657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 11635617 - 11635685
Alignment:
| Q |
225 |
gccattcttgatggatgtcctcttctcgagtcgcttggcattgaggaatgttatcatctggatttgagt |
293 |
Q |
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|||||||| |||||||||||||||||||||| ||| ||||| | |||||||||||| || |||||| |
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| T |
11635617 |
gccattctgaatggatgtcctcttctcgagtcactttacattggaggatgttatcatcttgaattgagt |
11635685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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