View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3068_low_3 (Length: 391)
Name: NF3068_low_3
Description: NF3068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3068_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 373
Target Start/End: Original strand, 54701443 - 54701804
Alignment:
| Q |
8 |
ccaagaatatctcaactactatgacgctaacttgtattctcatttcttagttatctttattttcagagaaaaacaatggcaggtgatgtagaaacgaacc |
107 |
Q |
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| T |
54701443 |
ccaagaatatctcaactactatgacgctaacttgtattctcatttcttagttatctttattttcagagaaaaacaatggcaggtgatgtagaaacgaacc |
54701542 |
T |
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| Q |
108 |
ccaaaagctctctgcatagtcgcagcaacgactagcttaccctcggcatcacaccctaccgtatcacatcatcaataagtcacacactcgatgacttgca |
207 |
Q |
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| T |
54701543 |
ccaaaagctctctgcatagtcgcagcaacgactagcttaccctcggcatcacaccctaccgtatcacatcatcaataagtcacacactcgataacttgca |
54701642 |
T |
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| Q |
208 |
ggatttgtataggcacatatatataagctactccacatgacaatttcccaacaagcattggcacgataaggcagcgagaaacaagttgatgaactatttg |
307 |
Q |
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| T |
54701643 |
ggatttgtataggcac----atataagctactccacatgacaatttcccaacaagcattggcacgataaggcagcgagaaacaagttgatgaactatttg |
54701738 |
T |
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| Q |
308 |
atggatctagttaaagattgtatggtgcaatcaaaggatatcatgcatgaactacggtcagttatt |
373 |
Q |
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| T |
54701739 |
atggatctagttaaagattgtatggtgcaatcaaaggatatcatgcatgaactaaggtcagttatt |
54701804 |
T |
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