View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3068_low_4 (Length: 359)
Name: NF3068_low_4
Description: NF3068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3068_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 11584342 - 11584450
Alignment:
| Q |
234 |
caccactaccagtttgtagtgtaataaacaatagtctaattgaaattttgatggttctaaccccaagatttatcacaacaaaaaacattgtttaaccaac |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584342 |
caccactaccagtttgtagtgtaataaacaagagtctaattgaaattttgatggttctaaccccaagatttatcacaacaaaaaacattgtttaaccaac |
11584441 |
T |
|
| Q |
334 |
aagcatttt |
342 |
Q |
| |
|
||||||||| |
|
|
| T |
11584442 |
aagcatttt |
11584450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 11584130 - 11584281
Alignment:
| Q |
4 |
caaccatagtctcggattgcataattctatgatttggtgctttgtgatcaaaattgttttgagagggagttaagttctagtgagtatagatatcactttt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11584130 |
caaccatagtctcggattgcataattctaag------tgctttgtgatcaaaattgttttgagagggatttaagttctagtgagtatagatatcactttt |
11584223 |
T |
|
| Q |
104 |
taaaataacaaagggcaaaacgcacatggatttattgtctgcaatgcatagaagcttataataaagtatgc |
174 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584224 |
taaaataacaaa-------------atggatttattgtctgcaatgcatagaagcttataataaagtatgc |
11584281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University