View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3068_low_5 (Length: 345)
Name: NF3068_low_5
Description: NF3068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3068_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 9353941 - 9353627
Alignment:
| Q |
13 |
aatatcacattgttttggaacataagagtcacccaataatgttgctatggttcattcccacatttgatactctctccttccatacaagaaaatcttgaac |
112 |
Q |
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| T |
9353941 |
aatatcacattgttttggaacataagagtcacccaataatgttgctatggttcattcccacatttgatactctctccttccatacaagaaaatcttgaac |
9353842 |
T |
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| Q |
113 |
gctctcccaccaaacatgatcttcaaagttcttcctcaaatcaacattaaccttgaacagaatcttcagcctgcaacataaaagtttacactaacgtaag |
212 |
Q |
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| T |
9353841 |
gctctcccaccaaacatgatcttcaaagttcttcctcaaatcaacattaaccttgaacagaatcttcagcctgcaacataaaagtttacactaacgtaag |
9353742 |
T |
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| Q |
213 |
ataaaaatgtagtatttgaaaattgttttcgaaaaggttgtaaattaaaattagatggcaatatgattgattcttattggatctccatcttctcgacaac |
312 |
Q |
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| T |
9353741 |
ataaaaatgtagtatttgaaaattgttttcgaaaaggttgtaaattaaaattagatggcaatatgattgattcttattggatctccatcttcttgacaac |
9353642 |
T |
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| Q |
313 |
tttatattgtgtctc |
327 |
Q |
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| T |
9353641 |
tttatatcgtgtctc |
9353627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 651395 - 651342
Alignment:
| Q |
264 |
tagatggcaatatgattgattcttattggatctccatcttctcgacaactttat |
317 |
Q |
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| T |
651395 |
tagatgacaatatgattgattcttagtggatctccgtcttctcggaaactttat |
651342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 8295384 - 8295328
Alignment:
| Q |
104 |
atcttgaacgctctcccaccaaacatgatcttcaaagttcttcctcaaatcaacatt |
160 |
Q |
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| T |
8295384 |
atcttgaacactcttccaccaaacatgaacttcattgttcttccccaagtcaacatt |
8295328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 10265735 - 10265683
Alignment:
| Q |
104 |
atcttgaacgctctcccaccaaacatgatcttcaaagttcttcctcaaatcaa |
156 |
Q |
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| T |
10265735 |
atcttgaagactctcccaccaaacatgaacttcattgttcttccacaaatcaa |
10265683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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