View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3068_low_6 (Length: 322)
Name: NF3068_low_6
Description: NF3068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3068_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 38830710 - 38831010
Alignment:
| Q |
7 |
gcagcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctt |
106 |
Q |
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| T |
38830710 |
gcagcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctt |
38830809 |
T |
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| Q |
107 |
tcttaacacgaggatatagggctatccttaacttctctgagcatgttgtgaaggagtctcttcaaaacatgaattttaatacattgttaaatcgtggttg |
206 |
Q |
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| T |
38830810 |
tcttaacacgaggatatagggctatccttaacttctctgagcatgttgtgaaggagtctcttcaaaacatgaattttaagacattgttaaatcaaggttg |
38830909 |
T |
|
| Q |
207 |
ctcacctttattggaactaaaaaggatgcatgtgttgagaacaaggtctaagaaccctagtaaaaagggaaaaagggattccaagagcattgtgttgaac |
306 |
Q |
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| T |
38830910 |
ctcacctttattagaactaaaaaggatgcatgtgttgagaacaaggtctaagaaccctagtaaaaagggaaaaagggattccaagagcatggtgttgaac |
38831009 |
T |
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| Q |
307 |
a |
307 |
Q |
| |
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| |
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|
| T |
38831010 |
a |
38831010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 38862437 - 38862531
Alignment:
| Q |
13 |
gagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagcttt |
107 |
Q |
| |
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| T |
38862437 |
gagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagcttt |
38862531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 30623988 - 30623874
Alignment:
| Q |
7 |
gcagcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctt |
106 |
Q |
| |
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||||| || ||||| ||| |||||||||| |||||| | || |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
30623988 |
gcagcggaaataagagactcaacaagaaaaggtgttagagtttggattggtacatttgatacagctgaagctgctgctttagcttatgatcaagcagctt |
30623889 |
T |
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| Q |
107 |
tcttaacacgaggat |
121 |
Q |
| |
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| | |||| |||||| |
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| T |
30623888 |
tatcaacaagaggat |
30623874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 30629619 - 30629505
Alignment:
| Q |
7 |
gcagcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctt |
106 |
Q |
| |
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||||| || ||||| ||| |||| |||||||||||| | || |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
30629619 |
gcagcggaaataagagactcaactagaaatggtgttagagtttggattggtacatttgatacagctgaagcagcagctttagcttatgatcaagcagctt |
30629520 |
T |
|
| Q |
107 |
tcttaacacgaggat |
121 |
Q |
| |
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| | |||| |||||| |
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|
| T |
30629519 |
tatcaacaagaggat |
30629505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 30689781 - 30689733
Alignment:
| Q |
53 |
ttggaacatttgatacagctgaagcagctgctttagcttatgaccaagc |
101 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
30689781 |
ttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagc |
30689733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 30718824 - 30718776
Alignment:
| Q |
53 |
ttggaacatttgatacagctgaagcagctgctttagcttatgaccaagc |
101 |
Q |
| |
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| T |
30718824 |
ttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagc |
30718776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 19720022 - 19719928
Alignment:
| Q |
13 |
gagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagcttt |
107 |
Q |
| |
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|||||||||||| |||||||||| || | | | || ||| |||||||||| | || || |||| ||||||||||||||| |||||||| ||||| |
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| T |
19720022 |
gagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagctgcttt |
19719928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 19840571 - 19840664
Alignment:
| Q |
13 |
gagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctt |
106 |
Q |
| |
|
|||||||||||| |||||||||| || | | | || ||| |||||||||| | || || |||| ||||||||||||||| |||||||| |||| |
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| T |
19840571 |
gagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgctt |
19840664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 4420197 - 4420155
Alignment:
| Q |
53 |
ttggaacatttgatacagctgaagcagctgctttagcttatga |
95 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| |
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| T |
4420197 |
ttggtacatttgatacagctgaacaagctgctttagcttatga |
4420155 |
T |
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