View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_12 (Length: 565)
Name: NF3069_high_12
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 95 - 547
Target Start/End: Complemental strand, 32260953 - 32260501
Alignment:
| Q |
95 |
acgatggatccaatatgtgatatataagattaattaagtatttaaactattgcgtaccttgatttggtgcaatttaataaaggttataaggtgaggtatg |
194 |
Q |
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| T |
32260953 |
acgatggattcaatatgtgatatataagattaattaagtatttaaactattgcgtaccttgatttggtgcaatttaataaaggttataaggtgaggtatg |
32260854 |
T |
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| Q |
195 |
cccttgatgttcaacatgaggccaagcactgtgccatgtttgggcttgatgttatatatcatagaaaccaacacacaagcaaccacctttgctatgtctc |
294 |
Q |
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| T |
32260853 |
cccttgatgttcaacatgaggccaagcactgtgccatgtttgggcttgatgttatatatcatagaaaccaacacacaagcaaccacctttgctatgtctc |
32260754 |
T |
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| Q |
295 |
cggcaaagaagataagttgcatagttatacattctcgccaatcctcaagtgcagccaaatttgtggtcatgccaacataaacaaagaagaaaggtaacaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32260753 |
cggcaaagaagataagttgcatagttatacattctcgccaatcctcaagtgcagccaaatttgtggtcatgccaacataaacaaagaagaaaggtaacaa |
32260654 |
T |
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| Q |
395 |
aaattctgagatgataagttcacacttttcaaccaatgttgtccctaaagggggtccactcggaataatcaaaccccaaatcaatggtccaataagaaat |
494 |
Q |
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| T |
32260653 |
aaattctgagatgataagttcacacttttcaaccaatgttgtccctaaagggggtccactcggaataatcaaaccccaaatcaatggtccaataagaaat |
32260554 |
T |
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| Q |
495 |
gttagcccaatcatgtcagtaataccagccataactaaagcaccaagaagaat |
547 |
Q |
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| T |
32260553 |
gttagcccaatcatgtcagtaatagcagccataactaaagcaccaagaagaat |
32260501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32261090 - 32260998
Alignment:
| Q |
1 |
ttaaaaagagtttaagagttaaaggttcagggttcaagtcttgcnnnnnnngaatactaatatacaaacaattaacatactaacatttattcc |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261090 |
ttaaaaagagtttaagagttaaaggttcagggttcaagtcttgcaaaaaaagaatactaatatacaaacaattaacatactaacatttattcc |
32260998 |
T |
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