View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_high_15 (Length: 525)

Name: NF3069_high_15
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_high_15
NF3069_high_15
[»] chr7 (18 HSPs)
chr7 (128-525)||(1344685-1345091)
chr7 (261-443)||(1102784-1102966)
chr7 (11-89)||(32996528-32996608)
chr7 (473-525)||(1103049-1103100)
chr7 (14-61)||(1344638-1344686)
chr7 (24-92)||(49078226-49078294)
chr7 (24-91)||(8062911-8062978)
chr7 (24-95)||(18942731-18942802)
chr7 (24-89)||(5358207-5358272)
chr7 (27-90)||(34703628-34703691)
chr7 (52-91)||(40355139-40355178)
chr7 (23-97)||(12927847-12927921)
chr7 (24-94)||(26904941-26905010)
chr7 (24-94)||(30601293-30601363)
chr7 (24-89)||(39608622-39608687)
chr7 (26-90)||(10228531-10228595)
chr7 (24-84)||(29196758-29196818)
chr7 (24-92)||(38838687-38838755)
[»] chr4 (18 HSPs)
chr4 (262-464)||(53469870-53470072)
chr4 (24-97)||(12034374-12034447)
chr4 (24-89)||(46804755-46804820)
chr4 (11-95)||(31903511-31903597)
chr4 (24-92)||(4161619-4161687)
chr4 (24-93)||(8171002-8171071)
chr4 (24-97)||(17381276-17381349)
chr4 (24-95)||(11840075-11840146)
chr4 (23-86)||(17381590-17381653)
chr4 (24-89)||(29223454-29223519)
chr4 (24-93)||(30316043-30316112)
chr4 (24-95)||(17753252-17753324)
chr4 (24-94)||(11839763-11839833)
chr4 (24-89)||(29223115-29223180)
chr4 (24-97)||(32934181-32934254)
chr4 (60-96)||(3892515-3892551)
chr4 (31-91)||(24806777-24806837)
chr4 (473-521)||(53469804-53469852)
[»] chr1 (15 HSPs)
chr1 (203-521)||(24284484-24284801)
chr1 (25-95)||(35684931-35685001)
chr1 (34-97)||(34177536-34177599)
chr1 (26-95)||(45392282-45392351)
chr1 (26-89)||(27900946-27901009)
chr1 (24-83)||(45679510-45679569)
chr1 (24-82)||(19464222-19464280)
chr1 (25-90)||(26515039-26515104)
chr1 (23-95)||(6728036-6728108)
chr1 (23-95)||(31134764-31134836)
chr1 (23-89)||(36144785-36144851)
chr1 (42-91)||(32669783-32669832)
chr1 (24-85)||(34826801-34826862)
chr1 (497-525)||(24272702-24272730)
chr1 (24-88)||(27900620-27900684)
[»] chr8 (8 HSPs)
chr8 (20-91)||(21600674-21600745)
chr8 (20-95)||(8340342-8340417)
chr8 (11-95)||(21601902-21601987)
chr8 (52-104)||(44362723-44362777)
chr8 (28-95)||(2988389-2988456)
chr8 (24-93)||(21600398-21600467)
chr8 (24-89)||(28802283-28802348)
chr8 (24-92)||(4586747-4586815)
[»] chr5 (8 HSPs)
chr5 (24-97)||(23159021-23159094)
chr5 (24-89)||(29686426-29686491)
chr5 (24-90)||(16127049-16127115)
chr5 (24-93)||(6217376-6217445)
chr5 (24-89)||(6217684-6217749)
chr5 (23-92)||(26675309-26675378)
chr5 (23-92)||(26946917-26946986)
chr5 (24-88)||(29714724-29714789)
[»] chr2 (6 HSPs)
chr2 (24-92)||(40124261-40124329)
chr2 (24-97)||(20167633-20167706)
chr2 (29-83)||(5708985-5709039)
chr2 (31-93)||(39273399-39273461)
chr2 (25-89)||(8940177-8940241)
chr2 (23-87)||(15818626-15818693)
[»] chr3 (15 HSPs)
chr3 (24-95)||(46848411-46848482)
chr3 (11-97)||(30843830-30843918)
chr3 (24-102)||(621900-621976)
chr3 (23-92)||(51889754-51889823)
chr3 (31-89)||(30843539-30843597)
chr3 (101-198)||(2535048-2535145)
chr3 (32-89)||(21568301-21568358)
chr3 (24-89)||(40619231-40619296)
chr3 (26-94)||(21568576-21568644)
chr3 (24-64)||(38989754-38989794)
chr3 (27-97)||(12832033-12832101)
chr3 (24-95)||(39336512-39336583)
chr3 (24-89)||(14984407-14984471)
chr3 (24-72)||(1324507-1324555)
chr3 (24-84)||(48660559-48660619)
[»] chr6 (6 HSPs)
chr6 (25-95)||(18354790-18354860)
chr6 (24-88)||(7792013-7792077)
chr6 (30-89)||(31141917-31141976)
chr6 (23-97)||(6524836-6524910)
chr6 (24-74)||(34937444-34937494)
chr6 (24-92)||(10067762-10067830)
[»] scaffold0329 (1 HSPs)
scaffold0329 (24-89)||(6196-6261)
[»] scaffold0086 (1 HSPs)
scaffold0086 (20-90)||(21894-21964)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 128 - 525
Target Start/End: Original strand, 1344685 - 1345091
Alignment:
Q  128 ttgtatggaacatgagtaaagatatttgtagatgctaattgtgagacatcatgttaggtttgcaatcacacgtattgagaggacaaaacacattgatgtg 227  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1344685 ttgtaaggaacacgagtaaagatatttgtagatgctgattgtgagacatcatgttaggtttgcaatcacacatattgagaggacaaaacacattgatgtg 1344784  T
Q  228 aattaccattttctgacaactaagaagatgatcaaggtaaacaaagtggatacatcagacaacccagccgataagtttaccaagccggttctgcacaacg 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |  |    
T  1344785 aattaccattttctgacaactaagaagatgatcaaggtaaacaaagtggatacatcagacaatccagccgataagtttaccaagctggttccgcagagtg 1344884  T
Q  328 agtttcaacattgtttgaactagctcaatgatagaagtcgttgattgccctcagaggggcaaggcctgaggcaaagcaggcacatatgagcattcaatgt 427  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  1344885 agtttcaacattgtttgaactagttcaatgatagaagtcgttgattgccctcagaggggcaaggcctgaggcagagcaggcccatatgagcattcaatgt 1344984  T
Q  428 aatgcatttggcacatctggtacttcga---------gtgcatctgattatactgagaggattcaagtcaaggtggagatttgttgaaatatgtcttgaa 518  Q
    |||||||||||||||||||||| |||||         |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  1344985 aatgcatttggcacatctggtaattcgagtacatctggtgcatctgattattcggagaggattcaagtcaaggtggagatttgttgaaatatgtcttgaa 1345084  T
Q  519 ttagtgt 525  Q
    |||||||    
T  1345085 ttagtgt 1345091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 261 - 443
Target Start/End: Original strand, 1102784 - 1102966
Alignment:
Q  261 aaggtaaacaaagtggatacatcagacaacccagccgataagtttaccaagccggttctgcacaacgagtttcaacattgtttgaactagctcaatgata 360  Q
    |||||||||||| ||| |||| ||||||| ||||| |||| |||||||||| | |||| | |   |  ||||||| |||||||||||| |||||||| ||    
T  1102784 aaggtaaacaaaatgggtacaacagacaatccagctgatatgtttaccaagtcagttccgtagggcaggtttcaatattgtttgaacttgctcaatgtta 1102883  T
Q  361 gaagtcgttgattgccctcagaggggcaaggcctgaggcaaagcaggcacatatgagcattcaatgtaatgcatttggcacat 443  Q
    ||||| ||||||||||||  |||||||||||||||||||| ||||||| ||| ||  |||||  |||||||||| ||||||||    
T  1102884 gaagttgttgattgccctgggaggggcaaggcctgaggcagagcaggctcatctggacattctgtgtaatgcatctggcacat 1102966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 32996528 - 32996608
Alignment:
Q  11 cagagactattt--gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    ||||||||||||  |||||||||| |||||| ||||||||||||||| |||||| |||||||| ||||||| |||| ||||    
T  32996528 cagagactattttagaattttgatgcattgagggactattgtcactattcattagacattcaaggaccaaaatgaccatta 32996608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 525
Target Start/End: Original strand, 1103049 - 1103100
Alignment:
Q  473 gagaggattcaagtcaaggtggagatttgttgaaatatgtcttgaattagtgt 525  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  1103049 gagaagattcaagtcaaggtggagatttg-tgaaatatgccttgaattagtgt 1103100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 1344638 - 1344686
Alignment:
Q  14 agactatttgaa-ttttgatacattgatggactattgtcactactcatt 61  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  1344638 agactatttgaaattttgatacattgatggactattgtgactactcatt 1344686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 49078226 - 49078294
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    |||||||||||||||| | |||||||| ||||||||||||||||| | | || |||||||| |||||||    
T  49078226 aattttgatacattgaggaactattgtaactactcattacacattaagaaacgaaagtgacaattaccc 49078294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 8062911 - 8062978
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacc 91  Q
    |||||| |||||||||  ||||||||| ||||||| |||||||||||| ||||||| | |||||||||    
T  8062911 aattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactattacc 8062978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 18942802 - 18942731
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    ||||||||||||||||  ||||||| | |||| || |||||||||||  ||||||| |||||||||||||||    
T  18942802 aattttgatacattgagtgactattatgactattccttacacattcagggaccaaaatgactattacccctt 18942731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 5358272 - 5358207
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||||||||||||| |||||||||| |||| |||||||||||| |  ||  |||||||||||||    
T  5358272 aattttgatacattgaaggactattgtaactattcattacacatttagggatgaaagtgactatta 5358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 34703691 - 34703628
Alignment:
Q  27 tttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattac 90  Q
    |||||||||||||||||||||||| ||||||| ||| ||||| |  || |||| ||||||||||    
T  34703691 tttgatacattgatggactattgtgactactcgttatacatttatggatcaaaatgactattac 34703628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 40355139 - 40355178
Alignment:
Q  52 actactcattacacattcaaagaccaaagtgactattacc 91  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  40355139 actactcgttacacattcaaagaccaaaatgactattacc 40355178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 12927847 - 12927921
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    |||||||||||||| || |||||||||| ||||||   ||||||||||| ||| ||||||| | |||||| ||||    
T  12927847 gaattttgatacatcgaaggactattgtgactacttgctacacattcaaggactaaagtgaatgttacccatttt 12927921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 26905010 - 26904941
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccct 94  Q
    |||||||||||||||||| |||||| | |||| | ||||||||||||  | ||||||| ||||||||||||    
T  26905010 aattttgatacattgatg-actattatgactaattattacacattcatggtccaaagtcactattacccct 26904941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 30601363 - 30601293
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccct 94  Q
    |||||||| ||||||| | |||||| | |||| |||||||||||| |  ||||||||| ||||||||||||    
T  30601363 aattttgaaacattgaagaactattatgactaatcattacacatttagggaccaaagtaactattacccct 30601293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 39608622 - 39608687
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    ||||||||||||||||   |||||||| ||||||| |||||||||||| ||| ||| ||| |||||    
T  39608622 aattttgatacattgaaaaactattgtaactactccttacacattcaaggactaaaatgattatta 39608687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 10228595 - 10228531
Alignment:
Q  26 ttttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattac 90  Q
    |||||||||||||| ||  |||||| |||| || ||||||||| |||||||||| ||| ||||||    
T  10228595 ttttgatacattgaagggttattgtaactaatcgttacacatttaaagaccaaaatgattattac 10228531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 29196818 - 29196758
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgac 84  Q
    ||||||||||||||||   |||||||| |||| || |||||||||| | ||||||||||||    
T  29196818 aattttgatacattgaaaaactattgtgactattcgttacacattcgaggaccaaagtgac 29196758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 38838687 - 38838755
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    |||||| |||||||||| || |||||| ||||||| |||||||||||  ||||||| | | ||||||||    
T  38838687 aattttaatacattgatagaatattgtgactactcgttacacattcagggaccaaaataattattaccc 38838755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 262 - 464
Target Start/End: Complemental strand, 53470072 - 53469870
Alignment:
Q  262 aggtaaacaaagtggatacatcagacaacccagccgataagtttaccaagccggttctgcacaacgagtttcaacattgtttgaactagctcaatgatag 361  Q
    ||||||||||||||| |||| ||||||||||| | |||| ||||||||||||||||| | | | | || |||||||||||||||||| |||||||| |||    
T  53470072 aggtaaacaaagtgggtacaacagacaacccaactgatatgtttaccaagccggttccgtagagcaagattcaacattgtttgaacttgctcaatgttag 53469973  T
Q  362 aagtcgttgattgccctcagaggggcaaggcctgaggcaaagcaggcacatatgagcattcaatgtaatgcatttggcacatctggtacttcgagtgcat 461  Q
    |||| ||||||||||||  |||||||||||||||||||| || |||| ||| || ||||||  |||||||||| || |||||||||||| || |||||||    
T  53469972 aagttgttgattgccctaggaggggcaaggcctgaggcagagtaggctcatctgggcattctgtgtaatgcatctgccacatctggtacgtcaagtgcat 53469873  T
Q  462 ctg 464  Q
    |||    
T  53469872 ctg 53469870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 12034447 - 12034374
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    |||||||||||||||| |||||||||| ||||||| ||| |||||||  ||||||| |||||||||||||||||    
T  12034447 aattttgatacattgagggactattgtgactactcgttatacattcagggaccaaaatgactattacccctttt 12034374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 46804820 - 46804755
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||||||||||||| |||||||||||||| ||| ||||| |||||||||||| |||||||||||    
T  46804820 aattttgatacattgagggactattgtcactgctcgttacatattcaaagaccatagtgactatta 46804755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 31903511 - 31903597
Alignment:
Q  11 cagagactattt--gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    ||||||||||||  |||||||||||| |||| |||||||||| |||| || ||||||||||| |||||||| |||| ||||||||||    
T  31903511 cagagactattttggaattttgatacgttgagggactattgtaactattcgttacacattcagagaccaaaatgaccattacccctt 31903597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 4161687 - 4161619
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    |||||||||||||||| |||||||||| |||||||||||||||||    ||| ||||||||||||||||    
T  4161687 aattttgatacattgaaggactattgtgactactcattacacatttggggacgaaagtgactattaccc 4161619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 8171002 - 8171071
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccc 93  Q
    |||||| ||||||||| |||||||| | |||||||||||||||| ||  ||||||||||||| |||||||    
T  8171002 aatttttatacattgagggactattatgactactcattacacatccagggaccaaagtgactgttacccc 8171071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 17381349 - 17381276
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    |||||||||||||||| |||||||||| ||||||   ||||||||||   |||||| |||||||||||||||||    
T  17381349 aattttgatacattgaaggactattgtgactacttgctacacattcaggaaccaaaatgactattacccctttt 17381276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 11840075 - 11840146
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    |||||||||||||||| || ||||||  ||||||| |||| ||||||  ||||||| |||||||||||||||    
T  11840075 aattttgatacattgagggcctattgcgactactccttacgcattcagggaccaaaatgactattacccctt 11840146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 17381590 - 17381653
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgacta 86  Q
    ||||||||||||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||    
T  17381590 gaattttgatacattgagggactattgtgactacttgttactcattcagggaccaaagtgacta 17381653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 29223454 - 29223519
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||||||| ||||||| |||||||| |||||||||||  || ||||| |||||||||| |||||    
T  29223454 aattttgatatattgatgaactattgtgactactcattatccaatcaaataccaaagtgaatatta 29223519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 30316043 - 30316112
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccc 93  Q
    |||||||||||||||| ||||| |||| |||||| |||| |||||||  ||||||  |||||||||||||    
T  30316043 aattttgatacattgaaggacttttgtgactacttattatacattcagggaccaatatgactattacccc 30316112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 17753324 - 17753252
Alignment:
Q  24 aattttgatacattgatg-gactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    ||||||||||||||||   ||||||||| ||||||||||||| ||||| ||| |||| ||||||||| |||||    
T  17753324 aattttgatacattgaaatgactattgtgactactcattacatattcagagatcaaaatgactattatccctt 17753252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 11839833 - 11839763
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccct 94  Q
    ||||| |||| ||||| ||||||||||  |||||| ||||| ||||| |||||||| || |||||||||||    
T  11839833 aatttcgatatattgagggactattgtggctactcgttacaaattcatagaccaaaatggctattacccct 11839763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 29223180 - 29223115
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||| ||||||||| | | |||||| |||||||||||||| || ||  ||||||||||||||||    
T  29223180 aatttttatacattgaagaattattgtgactactcattacacgtttaagcaccaaagtgactatta 29223115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 32934181 - 32934254
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    |||||||||||||||| |||||||| |    |||| |||||||||||  ||||||| ||| |||||||||||||    
T  32934181 aattttgatacattgagggactattatggtcactccttacacattcagggaccaaaatgattattacccctttt 32934254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 3892515 - 3892551
Alignment:
Q  60 ttacacattcaaagaccaaagtgactattaccccttt 96  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  3892515 ttacacattcaaagaccaaagtgtctattacctcttt 3892551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 24806777 - 24806837
Alignment:
Q  31 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacc 91  Q
    ||||||| | |||||||||| |||||| ||||| |||||| | |||||| |||||||||||    
T  24806777 atacattaagggactattgtaactacttattacgcattcagataccaaaatgactattacc 24806837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 521
Target Start/End: Complemental strand, 53469852 - 53469804
Alignment:
Q  473 gagaggattcaagtcaaggtggagatttgttgaaatatgtcttgaatta 521  Q
    |||| ||||||||||| | |||||||||||||||||||| ||| |||||    
T  53469852 gagaagattcaagtcacgatggagatttgttgaaatatgcctttaatta 53469804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 203 - 521
Target Start/End: Original strand, 24284484 - 24284801
Alignment:
Q  203 tgagaggacaaaacacattgatgtgaattaccattttctgacaactaagaagatgatcaaggtaaacaaagtggatacatcagacaacccagccgataag 302  Q
    ||||| ||||||||||||| |||| |  ||||||||||||| |||| |||||| |||||||||||||||||||  |||| |||||||| || | |||| |    
T  24284484 tgagaagacaaaacacattaatgtcaggtaccattttctgataactgagaagaggatcaaggtaaacaaagtgagtacaacagacaactcaactgatatg 24284583  T
Q  303 tttaccaagccggttctgcacaacgagtttcaacattgtttgaactagctcaatgatagaagtcgttgattgccctcagaggggcaaggcctgaggcaaa 402  Q
    ||||  |||||||||| ||| |   ||||||||||||||||||||| |||||||| ||||||  ||||||| |||   |||||||||||||| ||||| |    
T  24284584 tttatgaagccggttccgcagagaaagtttcaacattgtttgaacttgctcaatgttagaagctgttgatttccc-atgaggggcaaggcctaaggcaga 24284682  T
Q  403 gcaggcacatatgagcattcaatgtaatgcatttggcacatctggtac-ttcgagtgcatctgattatactgagaggattcaagtcaaggtggagatttg 501  Q
    |||| | |||||| | |||   |||||||| | ||| || ||  |||| |||| |||   ||| ||||   ||||||||||||||||||||||| |||||    
T  24284683 gcagactcatatgggtattttgtgtaatgcttctggtacttcgagtacattcg-gtgttcctggttatctggagaggattcaagtcaaggtggaaatttg 24284781  T
Q  502 ttgaaatatgtcttgaatta 521  Q
    |||||||||| |||||||||    
T  24284782 ttgaaatatgccttgaatta 24284801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 35684931 - 35685001
Alignment:
Q  25 attttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||  ||||||||||||||| |||||||    
T  35684931 attttgatacattgaaggactattgtaactactcattgcacattcagggaccaaagtgactataacccctt 35685001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 34177536 - 34177599
Alignment:
Q  34 cattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    |||||| ||||||||||  ||||||||||||||||||  ||||||| |||||||||||||||||    
T  34177536 cattgaaggactattgtagctactcattacacattcagggaccaaaatgactattacccctttt 34177599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 45392351 - 45392282
Alignment:
Q  26 ttttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    |||||||||||||| |||||||| | |||||||||||||||||||   | |||| |||||||||||||||    
T  45392351 ttttgatacattgagggactattttgactactcattacacattcaggaatcaaaatgactattacccctt 45392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 27900946 - 27901009
Alignment:
Q  26 ttttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||| ||||||||| |||||||| | |||||||||||||||||||| || |||| |||||||||    
T  27900946 tttttatacattgaaggactattctgactactcattacacattcaaggatcaaattgactatta 27901009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 45679569 - 45679510
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtga 83  Q
    |||||| |||| |||||||| |||||| ||||||| ||||||||||| ||||||||||||    
T  45679569 aattttaatacgttgatggattattgtgactactcgttacacattcagagaccaaagtga 45679510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 19464280 - 19464222
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtg 82  Q
    |||||||||||||||| |||||||||| ||||||  ||||||||| || ||||||||||    
T  19464280 aattttgatacattgaaggactattgtgactacttgttacacatttaaggaccaaagtg 19464222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 26515104 - 26515039
Alignment:
Q  25 attttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattac 90  Q
    ||||| ||||||| | |||| ||| | |||||||||||||||| ||| ||||||||||||||||||    
T  26515104 attttaatacattaaaggacgattatgactactcattacacatccaaggaccaaagtgactattac 26515039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 6728036 - 6728108
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    |||||||||| |||||| |||||||||| |||| || |||||||||||  ||| ||| ||||||| |||||||    
T  6728036 gaattttgattcattgaaggactattgtgactattcgttacacattcagggacgaaaatgactatcacccctt 6728108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 31134764 - 31134836
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    ||||||| |||||||   ||||||| || ||||||| |||||||||||  ||||||| |||||||||||||||    
T  31134764 gaatttttatacattttgggactatcgtgactactcgttacacattcagggaccaaaatgactattacccctt 31134836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 36144851 - 36144785
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    ||||||||||||||||   || |||||| | ||||||||||| |||||| ||||||| |||||||||    
T  36144851 gaattttgatacattgggagagtattgtgattactcattacatattcaaggaccaaaatgactatta 36144785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 32669832 - 32669783
Alignment:
Q  42 gactattgtcactactcattacacattcaaagaccaaagtgactattacc 91  Q
    ||||||||| ||||||| |||||||||||  ||||||| |||||||||||    
T  32669832 gactattgtgactactcgttacacattcatggaccaaaatgactattacc 32669783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 34826862 - 34826801
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgact 85  Q
    |||||||||||||||| |||||||||| | ||  ||||||| ||||  ||||||||||||||    
T  34826862 aattttgatacattgaaggactattgtgattaaccattacatattcggagaccaaagtgact 34826801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 497 - 525
Target Start/End: Original strand, 24272702 - 24272730
Alignment:
Q  497 atttgttgaaatatgtcttgaattagtgt 525  Q
    |||||||||||||||||||||||||||||    
T  24272702 atttgttgaaatatgtcttgaattagtgt 24272730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 27900684 - 27900620
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatt 88  Q
    |||||||||||||| |  ||||||||| |||| || ||| | |||||| ||||||||||||||||    
T  27900684 aattttgatacattaagagactattgtaactattctttatatattcaaggaccaaagtgactatt 27900620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 21600674 - 21600745
Alignment:
Q  20 tttgaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacc 91  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||| |||||||||||    
T  21600674 tttgaattttgatacattgatggactattatgactaatcattacacattcagagaccaaattgactattacc 21600745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 8340342 - 8340417
Alignment:
Q  20 tttgaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    |||||||||||||||||| | ||||| |||| ||||||||||| ||||||||  |||||| ||||||||| |||||    
T  8340342 tttgaattttgatacattaaaggactgttgtgactactcattatacattcaagaaccaaaatgactattaaccctt 8340417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 21601987 - 21601902
Alignment:
Q  11 cagagactattt--gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||| |  ||||| |||| | ||||||| |||| ||||||||||    
T  21601987 cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattc-aggaccaaaatgaccattacccctt 21601902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 44362723 - 44362777
Alignment:
Q  52 actactcattacacattcaaagaccaaagtgactattacccct--tttggtttag 104  Q
    |||||||||||||| |||| |||||||||||||||||||||||  ||||||||||    
T  44362723 actactcattacacgttcagagaccaaagtgactattacccctaatttggtttag 44362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 2988389 - 2988456
Alignment:
Q  28 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    ||||||||||||  ||||||  | ||||||||||||| ||||| |||||||||| ||||||| |||||    
T  2988389 ttgatacattgaatgactataatgactactcattacatattcagagaccaaagtaactattatccctt 2988456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 21600467 - 21600398
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccc 93  Q
    |||||||||||||| | |||||||||| || ||||||| |||||||| | || |||||||| ||| ||||    
T  21600467 aattttgatacattaagggactattgtgacaactcattgcacattcagaaacaaaagtgaccatttcccc 21600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 28802348 - 28802283
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    ||||||||||||| ||||||||||||| |||| |  |||||||||||  ||| ||| |||||||||    
T  28802348 aattttgatacatcgatggactattgtgactatttgttacacattcagcgactaaaatgactatta 28802283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 4586815 - 4586747
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    |||||| ||||||| |  ||||||||| ||||||| |||||||||||| || |||| | ||||||||||    
T  4586815 aattttaatacattaagagactattgtaactactcgttacacattcaaggatcaaaataactattaccc 4586747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 23159094 - 23159021
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||  ||| |||||||||||||||||||||    
T  23159094 aattttgatacattgatggactattataactaatcattacacattcagggactaaagtgactattacccctttt 23159021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 29686491 - 29686426
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||| ||||||||| ||| |||||| ||||||||||| |||||||  |||||||||||||||||    
T  29686491 aattttaatacattgagggattattgtgactactcattatacattcatggaccaaagtgactatta 29686426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 16127115 - 16127049
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattac 90  Q
    ||||||||||| ||||  ||||||||| ||||||| ||||||||| |  ||||||| ||||||||||    
T  16127115 aattttgatactttgagagactattgtgactactccttacacatttagggaccaaaatgactattac 16127049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 6217445 - 6217376
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccc 93  Q
    |||||||||||||| |  ||||||||| ||||||  ||||| ||||||| | |||| |||||||||||||    
T  6217445 aattttgatacattaagtgactattgtaactactttttacatattcaaaaatcaaattgactattacccc 6217376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 6217684 - 6217749
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||||||||||||| ||||||||||  ||| ||  ||||||||||  ||||||| |||||||||    
T  6217684 aattttgatacattgagggactattgtggctattcgctacacattcatggaccaaaatgactatta 6217749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 26675309 - 26675378
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    |||| |||||||||| |  || |||||| | || |||||||||||||||  |||||||||||||||||||    
T  26675309 gaatattgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgactattaccc 26675378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 26946917 - 26946986
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    |||| |||||||||| |  || |||||| | || |||||||||||||||  |||||||||||||||||||    
T  26946917 gaatattgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgactattaccc 26946986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 29714724 - 29714789
Alignment:
Q  24 aattttgatacattgatg-gactattgtcactactcattacacattcaaagaccaaagtgactatt 88  Q
    ||||| |||||||||||  ||||||||| ||||||  ||||||||||||| |||||| ||||||||    
T  29714724 aatttcgatacattgataagactattgtaactactggttacacattcaaaaaccaaaatgactatt 29714789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 40124329 - 40124261
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    ||||| |||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  40124329 aatttcgatacattaatggactattgtgactactcgttacacattcaaggaccaaagtgactattaccc 40124261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 20167633 - 20167706
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    ||||||||| ||||||  ||||||||| ||||||  ||||||||| |||||||||| ||||||||||| |||||    
T  20167633 aattttgatgcattgagtgactattgtgactacttgttacacatttaaagaccaaaatgactattacctctttt 20167706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 5709039 - 5708985
Alignment:
Q  29 tgatacattgatggactattgtcactactcattacacattcaaagaccaaagtga 83  Q
    ||||||||||| |||||||||| | || ||||||||||||||| |||||||||||    
T  5709039 tgatacattgaaggactattgtgattaatcattacacattcaaggaccaaagtga 5708985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 39273399 - 39273461
Alignment:
Q  31 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccc 93  Q
    ||||||| | ||||||||||  |||||||||||||||||| |||||||| || ||||||||||    
T  39273399 atacatttagggactattgtggctactcattacacattcagagaccaaaatggctattacccc 39273461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 8940177 - 8940241
Alignment:
Q  25 attttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||||| |||||| | |||||||| |||||| |||||||||||| | |||||||||| |||||    
T  8940177 attttgatgcattgaagaactattgtgactacttattacacattcagacaccaaagtgattatta 8940241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 15818626 - 15818693
Alignment:
Q  23 gaattttgatacattga---tggactattgtcactactcattacacattcaaagaccaaagtgactat 87  Q
    |||||||||||||||||    |||||||||| |||||| |||||||||| |||||||| | |||||||    
T  15818626 gaattttgatacattgaaggaggactattgtgactacttattacacatttaaagaccacaatgactat 15818693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 46848411 - 46848482
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    |||||||||||||||| | |||||| | |||||||||||||||||||  |||||||||||||||||||||||    
T  46848411 aattttgatacattgaggaactattttgactactcattacacattcagggaccaaagtgactattacccctt 46848482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 30843830 - 30843918
Alignment:
Q  11 cagagactattt--gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    ||||||||||||  ||||||||||||||| |  ||||||||| |||||||||||||||||||   ||||||||||||||||| ||||||    
T  30843830 cagagactattttggaattttgatacattaagagactattgtgactactcattacacattcaggaaccaaagtgactattactcctttt 30843918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 621900 - 621976
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccccttttggttt 102  Q
    ||||||||||||||||  ||||||| | ||||||||||||||||||| ||||||||||||||||||  |||||| ||||    
T  621900 aattttgatacattga--gactattatgactactcattacacattcagagaccaaagtgactattattccttttagttt 621976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 51889823 - 51889754
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    |||||||||||||||||  ||||||||| ||||||| ||||||||||| ||| |||| ||||||||||||    
T  51889823 gaattttgatacattgaaagactattgtgactactccttacacattcagagatcaaaatgactattaccc 51889754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 30843597 - 30843539
Alignment:
Q  31 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||||||  ||||||||| |||||||||||||||| ||| ||||||||||| |||||    
T  30843597 atacattgaaagactattgtgactactcattacacatgcaaggaccaaagtgagtatta 30843539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 2535048 - 2535145
Alignment:
Q  101 ttagggagttctagatatagacttcttttgtatggaacatgagtaaagatatttgtagatgctaattgtgagacatcatgttaggtttgcaatcacac 198  Q
    ||||||||| ||||||||| ||||| |||||| || ||||||||| | | ||||||||||| || |||  |||||||  |||||||||  ||||||||    
T  2535048 ttagggagtgctagatatacacttcatttgtaagggacatgagtagaaacatttgtagatggtagttgcaagacatcgggttaggtttaaaatcacac 2535145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 21568358 - 21568301
Alignment:
Q  32 tacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    ||||||||  || |||||| ||||||||||||| ||| ||||||||||||||||||||    
T  21568358 tacattgagagattattgtgactactcattacatattaaaagaccaaagtgactatta 21568301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 40619231 - 40619296
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    |||||||||||||||| ||| || | | |||||||||||||||||||| || |||||| |||||||    
T  40619231 aattttgatacattgagggattaatatgactactcattacacattcaaggatcaaagtaactatta 40619296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 21568576 - 21568644
Alignment:
Q  26 ttttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccct 94  Q
    |||||||||||||   |||||||||||||| ||||||||||| ||  ||| ||||||||||||| ||||    
T  21568576 ttttgatacattgggagactattgtcactattcattacacatgcagggacgaaagtgactattatccct 21568644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 38989794 - 38989754
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattaca 64  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  38989794 aattttgatacattgatggactattgtgactagtcattaca 38989754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 12832101 - 12832033
Alignment:
Q  27 tttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    ||||||||||| | |||||||||| | || ||||||||  |||| |||||||||| |||||||||||||||    
T  12832101 tttgatacattaagggactattgtaattattcattaca--ttcagagaccaaagtaactattacccctttt 12832033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 39336583 - 39336512
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    |||||||||||||| | |||||| ||| |||| |||||||| |||||  |||||||| ||| ||||||||||    
T  39336583 aattttgatacattaaaggactagtgtaactaatcattacatattcatggaccaaagagacaattacccctt 39336512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 14984471 - 14984407
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    ||||| |||| ||||| |||||||||| ||||||| |||||||||| | ||||||| |||||||||    
T  14984471 aatttcgatatattgagggactattgtgactactcgttacacattc-aggaccaaaatgactatta 14984407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 1324555 - 1324507
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaa 72  Q
    ||||||||||||| || ||| |||||| | |||||||||||||||||||    
T  1324555 aattttgatacatcgaaggattattgtgattactcattacacattcaaa 1324507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 48660619 - 48660559
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgac 84  Q
    |||||||||||| |||  || |||||| |||| ||||||| |||||||||||||| |||||    
T  48660619 aattttgatacactgagtgattattgtaactaatcattacgcattcaaagaccaacgtgac 48660559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 18354790 - 18354860
Alignment:
Q  25 attttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 95  Q
    ||||||||||||||| |||||||  | ||||||||||||| ||||| |||||||||| ||| ||| |||||    
T  18354790 attttgatacattgaaggactataataactactcattacatattcagagaccaaagtaactgttatccctt 18354860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 7792077 - 7792013
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatt 88  Q
    |||||||||||||||| ||||||||||||| ||   ||||||||||| ||| |||| ||||||||    
T  7792077 aattttgatacattgagggactattgtcacgacatcttacacattcagagatcaaaatgactatt 7792013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 31141976 - 31141917
Alignment:
Q  30 gatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    ||||||||||||||||||||| |||||||   ||||||||||||| |||| | |||||||    
T  31141976 gatacattgatggactattgtgactactcggcacacattcaaagatcaaaataactatta 31141917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 6524910 - 6524836
Alignment:
Q  23 gaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 97  Q
    ||||||| |||||||||  ||||||| | |||||| ||||||||||||  ||||||| || ||||||||| ||||    
T  6524910 gaattttaatacattgagagactattatgactacttattacacattcatggaccaaaatggctattacccttttt 6524836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 34937494 - 34937444
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaaga 74  Q
    ||||| |||||||||| | |||||||| ||||||| |||||||||||||||    
T  34937494 aatttggatacattgaagaactattgtgactactcgttacacattcaaaga 34937444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 10067762 - 10067830
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 92  Q
    ||||| ||||||||||  |||||||||   ||||  |||||||||||||||| ||| ||||||||||||    
T  10067762 aatttcgatacattgagagactattgtggttacttgttacacattcaaagactaaaatgactattaccc 10067830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 6261 - 6196
Alignment:
Q  24 aattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 89  Q
    ||||||||||||||||||||||||||  ||||||| || |||||| | ||||| || |||||||||    
T  6261 aattttgatacattgatggactattgggactactcgttgcacattgagagaccgaaatgactatta 6196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 21894 - 21964
Alignment:
Q  20 tttgaattttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattac 90  Q
    |||||||||||||| |||||  ||||||||| ||||||  ||| ||||||| |||||||| ||||| ||||    
T  21894 tttgaattttgatatattgaaagactattgtgactacttcttaaacattcagagaccaaaatgacttttac 21964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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