View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_18 (Length: 493)
Name: NF3069_high_18
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Original strand, 17881857 - 17882319
Alignment:
| Q |
13 |
aaaatataaggaagaggagtgactagagacaaagataaaagacttattcacctctgacaaaaacgcatcgagtgatagtcctccacatgctttacttttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17881857 |
aaaatataaggaagaggagtgactagagacaaagataaaagacttattcacctctgacaaaaacgcatcgagtgatagtcctccacatgctttacttttt |
17881956 |
T |
|
| Q |
113 |
acagcatcctcatatggatattcaatccagggactacaattaaaaatcataaaatatcaaatactatttccaaaaagtcctcattgatggacttcataaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17881957 |
acagcatcctcatatggatattcaatccagggactgcaattaaaaatcataaaatatcaaatactatttccaaaaagtcctcattgatggacttcataaa |
17882056 |
T |
|
| Q |
213 |
aacaaagaagcaaagtcaaaagtatataccgcctccttaaagcgtgtgtgtacatttgaaaaattgcacagcataagaaagattacacaccatattggcc |
312 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17882057 |
aacaaagaagcaaagtcaaaagtatataccacatccttaaagcatgtgtgtacatttgaaaaattgcacagcatatgaaagattacacaccatattggcc |
17882156 |
T |
|
| Q |
313 |
aattaccaacttaagacgaaatacaaggaaacagtgcaaataaatgtaccatgtaatggtggaaaataaagtaaacttatctaggaacaaaatatgagga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17882157 |
aattaccaacttaagacgaaatacaaggaaacagtgcaaataaatgtaccatgtaatggtggaaaataaagtaaacttatctaggaacaaaatatgagga |
17882256 |
T |
|
| Q |
413 |
aagcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagcatcc |
475 |
Q |
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| T |
17882257 |
aagcagtctacctgtctggagcagtagaaaacaattctttaagttcacagggttggagcatcc |
17882319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 14774579 - 14774717
Alignment:
| Q |
37 |
agagacaaagataaaagacttattcacctctgacaaaaacgcatcgagtgatagtcctccacatgctttactttttacagcatcctcatatggatattca |
136 |
Q |
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||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||| |||| || |||| ||||||||||| |||||||||||| |
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| T |
14774579 |
agagacaaagataaaagacttgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcattcctttctacagcatccttgtatggatattca |
14774678 |
T |
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| Q |
137 |
atccagggactacaattaaaaatcataaaatatcaaata |
175 |
Q |
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| T |
14774679 |
atccagggactgcaattaaaagtcataaaatatcaaata |
14774717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 15049416 - 15049558
Alignment:
| Q |
33 |
gactagagacaaagataaaagacttattcacctctgacaaaaacgcatcgagtgatagtcctccacatgctttactttttacagcatcctcatatggata |
132 |
Q |
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||||||| ||||||||||||||||| | ||||||||| ||||| ||||| | ||||||| ||||| || || ||| ||||||||||| ||||||| |
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| T |
15049416 |
gactagacacaaagataaaagacttgtgcacctctgataaaaatgcatctaatgatagttctccaaatatattccttcctacagcatccttgtatggatt |
15049515 |
T |
|
| Q |
133 |
ttcaatccagggactacaattaaaaatcataaaatatcaaata |
175 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15049516 |
ttcaatccagggactgcaattaaaaatcataaaatatcaaata |
15049558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 15016626 - 15016774
Alignment:
| Q |
13 |
aaaatataaggaagaggagtgactagagacaaagataaaagacttattcac-----ctctgacaaaaacgcatcgagtgatagtcctccacatgctttac |
107 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||| ||||| | ||| |||||||||||| ||||| ||||| | ||||||| |||| || | |
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| T |
15016626 |
aaaatataaggaagagg---gcctagagacaaagataaatgacttgtgcactgcacctctgacaaaaatgcatcaagtgacaatcctccagatgcattcc |
15016722 |
T |
|
| Q |
108 |
tttttacagcatcctcatatggatattcaatccagggactacaattaaaaat |
159 |
Q |
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||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
15016723 |
tttctacagcatccttgtatggattttcaatccagggactgcaattaaaaat |
15016774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 14774792 - 14774879
Alignment:
| Q |
210 |
aaaaacaaagaagcaaagtcaaaagtatataccgcctccttaaagcgtgtgtgtacatttgaaaaattgcacagcataagaaagattaca |
299 |
Q |
| |
|
|||||||| |||| ||||||| ||||||| || | ||||| |||| ||| |||||||||||| |||||||| |||||||||||||||| |
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| T |
14774792 |
aaaaacaatgaagaaaagtcacaagtata--ccacatccttcaagcatgtatgtacatttgaataattgcacgacataagaaagattaca |
14774879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 15016879 - 15016961
Alignment:
| Q |
217 |
aagaagcaaagtcaaaagtatataccgcctccttaaagcgtgtgtgtacatttgaaaaattgcacagcataagaaagattaca |
299 |
Q |
| |
|
|||||||||||||| |||||| ||| | |||||||| || ||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
15016879 |
aagaagcaaagtcagcagtataaaccacatccttaaaaattgaatgtacatttgaaaaattccacaacataagaaagattaca |
15016961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 15049735 - 15049793
Alignment:
| Q |
414 |
agcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagca |
472 |
Q |
| |
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|||| ||||| | ||||||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
15049735 |
agcaatctacctttccggagcagtagaaaacagttcttcaagttcacggggttgcagca |
15049793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 36875200 - 36875058
Alignment:
| Q |
33 |
gactagagacaaagataaaagacttattcacctctgacaaaaacgcatcgagtgatagtcctccacatgctttactttttacagcatcctcatatggata |
132 |
Q |
| |
|
||||||||||||| ||| |||| | | |||||| |||||||| ||||| ||||||||||||||| |||| || |||| ||||||||||||||| ||| |
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| T |
36875200 |
gactagagacaaaaatagaagatgtgtgcacctcagacaaaaatgcatcaagtgatagtcctccaaatgcatttctttcaacagcatcctcatatagatt |
36875101 |
T |
|
| Q |
133 |
ttcaatccagggactacaattaaaaatcataaaatatcaaata |
175 |
Q |
| |
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| | ||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
36875100 |
tccgatccagggactacaatttaaaattgtaaaatatcaaata |
36875058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 460
Target Start/End: Complemental strand, 36874912 - 36874855
Alignment:
| Q |
403 |
aatatgaggaaagcagtctacatgtccggagcagtagaaaacaattcttcaagttcac |
460 |
Q |
| |
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||||| |||| |||| ||||| | ||||| ||||| |||||||||||||||||||||| |
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| T |
36874912 |
aatattaggatagcaatctacctttccggggcagtggaaaacaattcttcaagttcac |
36874855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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