View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3069_high_19 (Length: 488)
Name: NF3069_high_19
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 43410205 - 43409749
Alignment:
| Q |
19 |
ctctgcaccttgaacagaatcaatcacaagttgtagcttctttaaagagtggcccaccttctttatttttcttgaaggccatcttgtaatcccatgctgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43410205 |
ctctgcaccttgaacagaatcaatcacaagttgtagcttctttaaagagtggcccaccttctttatttttcttgaaggccatcttgtaatcccatgctgt |
43410106 |
T |
|
| Q |
119 |
ctgcatatccttttcagagttgtaggacacactgtatcacaaaattattatatatttaattactttcagattgtgattgagatcgagttgttggataata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43410105 |
ctgcatatccttttcagagttgtaggacacactgtatcacaaaattattat----ttaattactt-cagattgtgattgagatcgagttgttggataata |
43410011 |
T |
|
| Q |
219 |
atatccatgacatagttttatttaattaattaattaa----aactgaaattgaattttacaagtcacttaccaccgatgctctttgcagcgtcctttagg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43410010 |
atatccatgacatagttttatttaattaattaattaattaaaactgaaattgaattttacaagtcacttaccaccgatgctctttgcggcgtcctttagg |
43409911 |
T |
|
| Q |
315 |
cttccggcaaagtattgtctcagaaccggcaagcttatagtcttctccgccttggttcttcgcttgtccccggactttctcccactcgaagaagaagacg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43409910 |
cttccggcaaagtattgtctcagaaccggcaagcttatagtcttctccgccttggttcttcgcttgtccccggactttctcccactcgaagaagaagacg |
43409811 |
T |
|
| Q |
415 |
accggcgaccacaggcaccaggagattcttcaccagcttctacacttacaacacttgccctt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43409810 |
accggcgaccacaggcaccaggagattcttcaccagcttctacacttacaacacttgccctt |
43409749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 25531416 - 25531358
Alignment:
| Q |
95 |
ggccatcttgtaatcccatgctgtctgcatatccttttcagagttgtaggacacactgt |
153 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||| || ||||||||||| ||||| ||||| |
|
|
| T |
25531416 |
ggccatcttgaaattccatgttgtctgcatattctcttcagagttgttggacaaactgt |
25531358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University