View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_2 (Length: 758)
Name: NF3069_high_2
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 42910296 - 42909918
Alignment:
| Q |
1 |
tcaccaaggagaacatattttgttttgtggtgcaaaaaatggaataataattgtcaacatgcttgatattggtttggaacaaggtcctaatttcatgatt |
100 |
Q |
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| T |
42910296 |
tcaccaaggagaacatattttgttttgtggtgcaaaaaatggaacaataattgtcaacatgcttgatattggtttggaacaaggtcctaatttcatgatt |
42910197 |
T |
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| Q |
101 |
agagaagacaaatcacttgaattgacaggacacatgtaataaacaacacctaaaacttgtcatttctcaatacttatgatataatagttatgtaaagaag |
200 |
Q |
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| T |
42910196 |
agagaagacaaatcacttgaattgacaggacacatgtaataaacaacacctaaaacttgtcatttctcaa-------------atagttatgtaaagaag |
42910110 |
T |
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| Q |
201 |
ttaattattgtgtataattgtgagcttgcttttctgtcaactttgcaggggagccattactgcaatggcatctagtcggacatgcctaatatcgtcttct |
300 |
Q |
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| T |
42910109 |
ttaattattgtgtataattgtgagcttgcttttctgtcaactttgcaggggagccattactgcaatggcatctagtcggacatgcctaatatcgtcttct |
42910010 |
T |
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| Q |
301 |
gaagactgcacaatctgcatatgggatgtgatcggttggacaatcactcgaagattcgatcttcaaaaatgtaatttgaaatttctaactac |
392 |
Q |
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| T |
42910009 |
gaagactgcacaatctgcatatgggatgtgatcggttggacaatcactcgaagattcgatcttcaaaaatgtaatttgaaatttctaactac |
42909918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 528 - 758
Target Start/End: Original strand, 42909545 - 42909775
Alignment:
| Q |
528 |
aaacctgtgaaccaaacatattttgtctcaataaaccagtgcttcttaaatcaatgtaagtttgtttttctttgaagaggcgacacaaagaaagaagagt |
627 |
Q |
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| T |
42909545 |
aaacctgtgaaccaaacatattttgtctcaataaaccagtgcttcttaaatcaatgtaagtttgtttttctttgaagaggcgacacaaagaaagaagagt |
42909644 |
T |
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| Q |
628 |
ggtagtttccttgtatctgctgatctgcagaggacacttatccaatggagaaacaatatatcgtttgagctatctcgtgttattcgatgcggagaatgct |
727 |
Q |
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| T |
42909645 |
ggtagtttccttgtatctgctgatctgcagaggacacttatccaatggagaaacgatatatcgtttgagctctctcgtgttattcgatgcggagaatgct |
42909744 |
T |
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| Q |
728 |
ggagaccgaggtataacgacgagattagtta |
758 |
Q |
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| T |
42909745 |
ggagaccgaggtatcacgacgagattagtta |
42909775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 42909853 - 42909783
Alignment:
| Q |
457 |
gaaattgcgtggttacattgagtaaaagcacatatattaattaagtagtgtaaactattttcttattagca |
527 |
Q |
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| T |
42909853 |
gaaattgcgtggttacattgagtaaaagcacatatattaattaagtagtgttaactattttcttattagca |
42909783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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