View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_20 (Length: 457)
Name: NF3069_high_20
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_20 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 37 - 324
Target Start/End: Complemental strand, 31093449 - 31093162
Alignment:
| Q |
37 |
ttctccctaaaagcagaatttcttctccaaattcatcaaaaggcacgccgatcatatcaccaaaactccaacactttcaaaacattgtattacctgactc |
136 |
Q |
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| T |
31093449 |
ttctccctaaaagctgaatttcttctccaaattcatcaaaaggcacgccaatcatatcaccacaactccaacactttcaaaacattgtattacctgacga |
31093350 |
T |
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| Q |
137 |
ccactttagaagtaatgattgtaaccatccctgaaattagaacaagttcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31093349 |
ccactttagaagtaatgattgtaaccatccctgaaattagaacaagttcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatc |
31093250 |
T |
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| Q |
237 |
gcaatgattttgatctcatccagttccgggaaagcattttaaccagttctgaaataggtgacaccgaaattagaacaagttcataagc |
324 |
Q |
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| T |
31093249 |
ccaatgattttgatctcatccagttccgggaaagcattttaaccagttctgaaataggtgacaccgaaattagaacaagttcataagc |
31093162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 31093086 - 31093045
Alignment:
| Q |
400 |
cttgtttaaaaatttcttatatacttataaactcccaataag |
441 |
Q |
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| T |
31093086 |
cttgtttaaaaatttcttatatacttataaactcccaataag |
31093045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 232
Target Start/End: Complemental strand, 2179 - 1971
Alignment:
| Q |
39 |
ctccctaaaagcagaatttcttctccaaattcatcaaaaggcacgccgatcatatcaccaaaactccaacactttcaaaacattgtattacctgactccc |
138 |
Q |
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| T |
2179 |
ctccctaaaaactgaatttcttctccaaattcttcaaaaggcacgccgatcataccaccaccactccaaaaccttcgaaacattgcattacctgactccc |
2080 |
T |
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| Q |
139 |
actttagaagtaatgattgtaaccatc--------cctgaaatt-------agaacaagttcctaaacaagctagagggttagtccactaatgtgatatt |
223 |
Q |
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| T |
2079 |
actttagaagtaatgattgtaaccatcagacctctcctgtacttctgactcagcgccagctcctaaacaagctagagggttagtccactaatgtgatatt |
1980 |
T |
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| Q |
224 |
gcatatcca |
232 |
Q |
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||||||||| |
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| T |
1979 |
gcatatcca |
1971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 1970 - 1925
Alignment:
| Q |
248 |
gatctcatccagttccgggaaagcattttaaccagttctgaaatag |
293 |
Q |
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| T |
1970 |
gatctcatccggttccaggaaagcattttaacctgttctgaaatag |
1925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 31068 - 30980
Alignment:
| Q |
184 |
tcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatcgcaatgattttgatctcatccagttccgggaaagca |
272 |
Q |
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||||||| ||| |||||||||||||||| | | |||||||||||||||| | | | |||||||||| || |||||||| | |||||||| |
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| T |
31068 |
tcctaaaaaaggtagagggttagtccacaactttgatattgcatatccaaacctcgatgattttgaccttatccagtttcaggaaagca |
30980 |
T |
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