View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_22 (Length: 449)
Name: NF3069_high_22
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 134 - 439
Target Start/End: Complemental strand, 13503997 - 13503692
Alignment:
| Q |
134 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcattgtcttttgtgtaattaacc |
233 |
Q |
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| T |
13503997 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcacagtcttttgtgtaattaacc |
13503898 |
T |
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| Q |
234 |
tagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
333 |
Q |
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| T |
13503897 |
tagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
13503798 |
T |
|
| Q |
334 |
ggtacggccccagctccaggaccaagcaagagtcatgctccaaaaccaagcaagagtgatgctgcttctcttggttcaatctttggtgcctctatcttct |
433 |
Q |
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| T |
13503797 |
ggtacggccccagctccaggaccaagcaagagtcatgctccaaaaccaagcaagagtgatgctgcttctcttggttcaatctttggtgcctctatcttct |
13503698 |
T |
|
| Q |
434 |
cctttg |
439 |
Q |
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|||||| |
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| T |
13503697 |
cctttg |
13503692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 13504115 - 13504057
Alignment:
| Q |
18 |
aaaatcaatggaataactaac--gaccatataactataaggtaattatacattcttgtc |
74 |
Q |
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| T |
13504115 |
aaaatcaatggaataactaacacgaccatataactataaggtaattatacattcttgtc |
13504057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 1865592 - 1865541
Alignment:
| Q |
388 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctttg |
439 |
Q |
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| T |
1865592 |
agtgatgctgcttctcctggttcaatccttggtgtctctctcttctcctttg |
1865541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 1865727 - 1865632
Alignment:
| Q |
238 |
actaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
333 |
Q |
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| T |
1865727 |
actaagtacacaatgaagatgaagattgttgcttttgttgttgtcctcttagccgccataagctccgttatggcacgtgatcactaccatcatcat |
1865632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 1861585 - 1861536
Alignment:
| Q |
388 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctt |
437 |
Q |
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| T |
1861585 |
agtgatgctgtttcttttggttcaatccttggtgccactctcttctcctt |
1861536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 52500988 - 52501048
Alignment:
| Q |
266 |
ttgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcacca |
326 |
Q |
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| T |
52500988 |
ttgcttttgttgttgtcctcttagctaccatatgctccgttctggcacatgatcatcacca |
52501048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Original strand, 52501152 - 52501203
Alignment:
| Q |
388 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctttg |
439 |
Q |
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|||||||||| || ||||||||||||| ||||||| ||| |||||||||||| |
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| T |
52501152 |
agtgatgctgtttatcttggttcaatccttggtgcatctctcttctcctttg |
52501203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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