View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_28 (Length: 425)
Name: NF3069_high_28
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 41201586 - 41201266
Alignment:
| Q |
16 |
acgacgtcgtagagaaactttgaaaattgaaagagataacgcataggtaactactccacagcacatcaaaaacgaaaaccaaaacagcaacagtagtaga |
115 |
Q |
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| T |
41201586 |
acgacgtcgtagagaaactttgaaaattgaaagagataacgcataggtaactactccacaacacatcaaaaacgaaaaccaaaacagcaacagtagtaga |
41201487 |
T |
|
| Q |
116 |
gcaatggcgacggcggattccgacggtgtgacaccacctcatgacgaagattcttccgactcttccgttcccaattctcccaactccgccatcgttcccg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41201486 |
gcaatggcgacggcggattccgacggtgtgacaccacctcatgacgaagattcttccgactcttccgttcccaattctcccaactccgccatcgttcccg |
41201387 |
T |
|
| Q |
216 |
ccgctccatccgtctgtcttggccatttcgccattgattccgccggtggcgctttaattggctccgtttttggatacggtctttctcttctattcactat |
315 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41201386 |
ccgctccatccgtctgtcttgtccgtttcgccattgattccgccggtggcgctttaatgggctccgtttttggatacggtctttctcttcaattcactat |
41201287 |
T |
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| Q |
316 |
cagctttcactgattatagtc |
336 |
Q |
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||||||||||| ||||||||| |
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| T |
41201286 |
cagctttcactaattatagtc |
41201266 |
T |
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