View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_30 (Length: 414)
Name: NF3069_high_30
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 34101790 - 34101388
Alignment:
| Q |
1 |
caaacctctgctaagtaaaccttcgttatatttctgcaacatatcatcaatttcttccacatatgtttctttcggcggtggcaaaacagaattagccgta |
100 |
Q |
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| T |
34101790 |
caaacctctgctaagtaaaccttcgttatatttctgcaacatatcatcaatttcttccacatatgtttctttcggcggtggcaaaacagaattagccgta |
34101691 |
T |
|
| Q |
101 |
gaattttcagcgaatcttccaacaccggagtttgtagtggaaatcaaatctccaccgtccgtttcatcagaacttccaacaacaacaacaggacatttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |
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| T |
34101690 |
gaattttcagcgaatcttccaacaccggagtttgcagtggaaatcaaatctccaccgtccgtttcatcagaacttcccacaacaccaacaggacattcgc |
34101591 |
T |
|
| Q |
201 |
aatggcgaacgcaatactcgcccccttccaacgataagcgcgctgaggttgagagtgttgatctctaagcagagacgctccttgatttcatgatccatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34101590 |
aatggcgaacgcaatactcgcccccttccaacgataagcgcgctgaggttgagactgttgatctctaagcagagacgctccttgatttcatgatccatca |
34101491 |
T |
|
| Q |
301 |
caatatggagattgtgaggaatctgtgcttgaagtaacggtttcgcaaaatcgttaagtttggaaatcgtgtacacgtggaagtagtttttcatcttctt |
400 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34101490 |
caatgtggagattgtaaggaatctgtgcttgaagtaacgatttcgcaaaatcgtcaagtttggaaatcgtgtacacgtggaagtagtttttcatcttctt |
34101391 |
T |
|
| Q |
401 |
cat |
403 |
Q |
| |
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||| |
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| T |
34101390 |
cat |
34101388 |
T |
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